PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00016071-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family HSF
Protein Properties Length: 341aa    MW: 37900.7 Da    PI: 8.2448
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00016071-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.28.3e-36251172103
                            HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
           HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 
                            Fl+k+y++++d+++++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ Fkkg
  SMil_00016071-RA_Salv  25 FLTKTYQLVDDPATDHIVSWGEDDSTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANDFFKKG 103
                            9*****************************************************************99.........*********** PP

                            XXXXXXXXXXXXXX CS
           HSF_DNA-bind  90 kkellekikrkkse 103
                            +k+ll++i+r+k++
  SMil_00016071-RA_Salv 104 EKHLLCEIHRRKTS 117
                            ***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.6E-3817109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.6E-6021114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.8E-3422114IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000566.4E-202548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.3E-3125114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.4E-206375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.4E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MALMLDSCEG ILLSLDSQKS VPAPFLTKTY QLVDDPATDH IVSWGEDDST FVVWRPPEFA  60
RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANDFF KKGEKHLLCE IHRRKTSQPQ  120
VPHHHHPITG QGFFPYPSRL SISPTDSDDH PWGESSPPLA SPTGGGYHSV NTAASLTALS  180
EDNERLRRNN SMLMSELTHM RKLYNDIIYF VQNHVKPVAP SNSYHSSLFL PTSSPPSSAA  240
AMLHKPLTNL IGYQQMNGGG NPKQFPNSFV NPSSSPSKSS LTVAADSEAA APCRTKLFGV  300
ALSSKKRLHP ECNSTAATTN KTRLVLEKDD LGFNLMPPSS C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-222011716123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0639522e-87AK063952.1 Oryza sativa Japonica Group cDNA clone:001-123-F07, full insert sequence.
GenBankAK0993542e-87AK099354.1 Oryza sativa Japonica Group cDNA clone:J033042P04, full insert sequence.
GenBankAY3444942e-87AY344494.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083880.11e-177heat stress transcription factor B-4-like
SwissprotQ9C6351e-118HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A2I4EKB11e-160A0A2I4EKB1_JUGRE; heat stress transcription factor B-4-like
STRINGVIT_18s0001g10380.t011e-159(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27212450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-115heat shock transcription factor B4