PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00015950-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | WOX | ||||||||
Protein Properties | Length: 131aa MW: 15026.2 Da PI: 10.359 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 69.3 | 4.7e-22 | 28 | 87 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+ +Le l++ r+p+a+++e+++++l +++ ++V++WFqN++a+e++ SMil_00015950-RA_Salv 28 TRWNPTQEQIGILEMLYQGgMRTPNAHQIEQITAQLanygKIEGKNVFYWFQNHKARERQ 87 7*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 119.2 | 1.8e-38 | 28 | 89 | 4 | 65 |
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 tRW+Pt+eQi iLe+ly+ G+rtPn+++i++ita+L++yGkie+kNVfyWFQN+kaRerqkq SMil_00015950-RA_Salv 28 TRWNPTQEQIGILEMLYQGGMRTPNAHQIEQITAQLANYGKIEGKNVFYWFQNHKARERQKQ 89 8***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 9.961 | 23 | 88 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.33E-12 | 25 | 92 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 7.2E-6 | 25 | 92 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 9.2E-20 | 28 | 87 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.36E-5 | 28 | 89 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-8 | 29 | 87 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 131 aa Download sequence Send to blast |
LKTKTAMLNL GVRVPIWMQA EAPAPGGTRW NPTQEQIGIL EMLYQGGMRT PNAHQIEQIT 60 AQLANYGKIE GKNVFYWFQN HKARERQKQK RGLSPRQPPP SPFATGEDLD CSAQKRKCRS 120 WAFDQVDYRI L |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024166844.1 | 3e-49 | WUSCHEL-related homeobox 4 | ||||
Swissprot | Q6X7J9 | 8e-40 | WOX4_ARATH; WUSCHEL-related homeobox 4 | ||||
TrEMBL | A0A4D8YC15 | 2e-51 | A0A4D8YC15_SALSN; Uncharacterized protein | ||||
STRING | XP_008378020.1 | 4e-46 | (Malus domestica) | ||||
STRING | XP_004291086.1 | 2e-46 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6186 | 23 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46480.1 | 3e-42 | WUSCHEL related homeobox 4 |