PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00015883-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | HB-other | ||||||||
Protein Properties | Length: 255aa MW: 29399.1 Da PI: 9.1823 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 25.3 | 2.7e-08 | 195 | 239 | 13 | 54 |
HHHHHHHH...HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 13 eeLeelFe...knrypsaeereeLAkklgLterqVkvWFqNrRak 54 ++L++ + + +yp+++e+++L +++gL+ +q+ +WF N+R + SMil_00015883-RA_Salv 195 DILKNWWHhhsNWPYPTEDEKADLVERTGLELKQINNWFINQRKR 239 55555555332469***************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 1.0E-13 | 6 | 50 | IPR005540 | KNOX1 |
Pfam | PF03790 | 2.5E-13 | 8 | 48 | IPR005540 | KNOX1 |
PROSITE profile | PS50071 | 12.082 | 180 | 243 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.8E-11 | 182 | 247 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.03E-15 | 182 | 244 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 5.68E-11 | 183 | 241 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.8E-24 | 187 | 244 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 5.3E-17 | 200 | 239 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 218 | 241 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MANSGQQLKA EIAGHPLCEQ LVAAHVACLR VATPMGELPN IEAQLCESQH LLRSYAQTAT 60 HSLSKHQSQQ LETLLRQYVL ALWSLKEQLH QHVNRCREIE HTFISLTGNA LYPQSFSHQL 120 AFHPNSLGAG ARVGQGSGAT MWEDDEEHSE RALVERVRKK LKIELKEGFK SRIQQVRDEI 180 LRKRRSGKLA DDTTDILKNW WHHHSNWPYP TEDEKADLVE RTGLELKQIN NWFINQRKRK 240 WQNSNASRSK NNTYS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possible developmental regulator. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By wounding; up to 7-fold increase. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011072032.1 | 3e-92 | homeobox protein HD1 | ||||
Swissprot | P46606 | 1e-88 | HD1_BRANA; Homeobox protein HD1 | ||||
TrEMBL | A0A4D8Y4D6 | 7e-91 | A0A4D8Y4D6_SALSN; Uncharacterized protein | ||||
STRING | XP_004511615.1 | 6e-90 | (Cicer arietinum) | ||||
STRING | AES94129 | 7e-90 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62990.1 | 1e-90 | KNOTTED-like homeobox of Arabidopsis thaliana 7 |
Publications ? help Back to Top | |||
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