PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00015801-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | LBD | ||||||||
Protein Properties | Length: 181aa MW: 20452 Da PI: 4.4384 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126.5 | 1.3e-39 | 7 | 105 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +C aCk+lrr+C+++C++apyf +q +++fa+vhk+FGasnv+kll++lpe+ r+da+ ++ yeA ar++dP+yG++++i++lqqq+ SMil_00015801-RA_Salv 7 SCGACKFLRRRCTEECIFAPYFSYDQaANHFAAVHKVFGASNVSKLLSHLPEHSRSDAAITISYEALARMEDPIYGCIAHIFALQQQV 94 6***********************9978************************************************************ PP DUF260 88 eqlkaelallk 98 ++l++e+++ + SMil_00015801-RA_Salv 95 ASLEEEIQMYG 105 ******98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.471 | 6 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.2E-38 | 7 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MTGVSSSCGA CKFLRRRCTE ECIFAPYFSY DQAANHFAAV HKVFGASNVS KLLSHLPEHS 60 RSDAAITISY EALARMEDPI YGCIAHIFAL QQQVASLEEE IQMYGKAMAN LGINGESSNG 120 YFSREWENEA IMQTMMDPGT SDEIFEAYLL ERLLEQDYYL CQDNNLESLW TKYAAPPLSQ 180 W |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-35 | 3 | 101 | 7 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-35 | 3 | 101 | 7 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:17259263}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012858285.1 | 4e-70 | PREDICTED: LOB domain-containing protein 33 | ||||
Swissprot | Q9LHS8 | 3e-55 | LBD33_ARATH; LOB domain-containing protein 33 | ||||
TrEMBL | A0A4D8ZBM4 | 1e-112 | A0A4D8ZBM4_SALSN; Uncharacterized protein | ||||
STRING | Migut.F00757.1.p | 1e-69 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12769 | 15 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06080.1 | 1e-57 | LOB domain-containing protein 33 |
Publications ? help Back to Top | |||
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