PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00015736-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family B3
Protein Properties Length: 469aa    MW: 53694.9 Da    PI: 4.4682
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00015736-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.71.8e-12886286
                           EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                     B3  2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86
                           fk  +   +l + +l +p +f+++ +g    +++l l+d+ ++ W+vk+  +  +g  ++++GW +F+++n +k gD++v ++ +
  SMil_00015736-RA_Salv  8 FKFYL--PSLGEENLKIPSRFIQSVQGT--WPMDLALRDRYNNLWNVKV--EMVGGDWYFKDGWTKFADDNMIKGGDMLVYEYFS 86
                           55553..33444459*******999888..789****************..88888899*********************99754 PP
2B331.72.7e-102913651087
                            HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                     B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                             ++ g l++p + ++ +++k   + t++l d++gr+++ + +++   ++++++ GWk+ +  n +++ D+++ ++ ++
  SMil_00015736-RA_Salv 291 RHRAGELYIPMDVIRCYNLK--LPETVMLLDPKGRQFRATRKIWADERTFYFG-GWKGLCGVNMVEDEDSCICEFLQN 365
                            5566889*******999988..7779**************************9.******************997765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.71E-164100IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.6E-14495IPR015300DNA-binding pseudobarrel domain
CDDcd100171.92E-10595No hitNo description
PfamPF023621.9E-10786IPR003340B3 DNA binding domain
SMARTSM010196.0E-7798IPR003340B3 DNA binding domain
PROSITE profilePS5086311.4912098IPR003340B3 DNA binding domain
SuperFamilySSF1019363.92E-14279366IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.8E-10279366IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.233282377IPR003340B3 DNA binding domain
SMARTSM010195.8E-10285375IPR003340B3 DNA binding domain
PfamPF023621.3E-8289367IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MVNRPGFFKF YLPSLGEENL KIPSRFIQSV QGTWPMDLAL RDRYNNLWNV KVEMVGGDWY  60
FKDGWTKFAD DNMIKGGDML VYEYFSPGLL DFKVHGGSAC LTEGFGGQET KNIEEQIIKI  120
ESDDDIVTHT NETDYDPIDE EEYLHDGYYK VEQAMDDDTD DYDSTTKEEN LRDDHFQVVQ  180
VTDGKAISFI LRFYWHDDTD DDGCLPTTKE ANQRDAHPVG KQLMNVSKCV QITREEGPRD  240
DTPQQELVRY GTASSSKHKN KRDYDWYGVE IFKTGLIPQP RNPYFVTKKR RHRAGELYIP  300
MDVIRCYNLK LPETVMLLDP KGRQFRATRK IWADERTFYF GGWKGLCGVN MVEDEDSCIC  360
EFLQNGDDLR ISSPSSSPPP SAERYLSSSP PPSEVSIIPA NYKICYKIGA KNCIVRASDV  420
PVNGVTEAAS FRGCVQCEEE EVLVVRGDSE QRRELGEGEM ELGEREDGE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A4D8YAI41e-137A0A4D8YAI4_SALSN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10912264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60142.12e-11B3 family protein