PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00015646-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | ERF | ||||||||
Protein Properties | Length: 162aa MW: 18438.9 Da PI: 9.0793 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.9 | 5.1e-18 | 39 | 89 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y GVr ++ +g+++AeIrd + + +r++lg+f taeeAa a+++a+ + +g SMil_00015646-RA_Salv 39 RYIGVRKRP-WGKYAAEIRDSTR---HgRRVWLGTFNTAEEAALAYDQAAFATRG 89 799******.**********422...25**********************99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.76E-26 | 38 | 98 | No hit | No description |
SuperFamily | SSF54171 | 1.24E-21 | 39 | 99 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.9E-28 | 39 | 103 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.4E-13 | 39 | 89 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.272 | 39 | 97 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.1E-28 | 39 | 97 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.0E-10 | 40 | 51 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.0E-10 | 63 | 79 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MNAWPLKQEE DQSLMSFEFC TSASISHHGN GKYPKMEKRY IGVRKRPWGK YAAEIRDSTR 60 HGRRVWLGTF NTAEEAALAY DQAAFATRGA VVPLNFPIER VIESLEKINY RCEEGSSPAK 120 ALKESHKMMK QTKKHARQQD VVVLHDLGSD LLDQLLSQTD ST |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-26 | 39 | 99 | 14 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012838903.1 | 5e-73 | PREDICTED: ethylene-responsive transcription factor 1B-like | ||||
Swissprot | A0A3Q7I5Y9 | 3e-44 | ERFC3_SOLLC; Ethylene-response factor C3 | ||||
TrEMBL | A0A4D9AH08 | 5e-78 | A0A4D9AH08_SALSN; Pathogenesis-related proteins transcriptional activator PTI5 | ||||
STRING | Migut.K00942.1.p | 2e-72 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 2e-29 | ethylene response factor 1 |
Publications ? help Back to Top | |||
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