PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00015459-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

C3H

Protein Properties

Length: 1179aa MW: 129326 Da PI: 7.6541

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00015459-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.5	7.3e-06	795	815	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 Cr++++ G C+ G++C+F+H+ SMil_00015459-RA_Salv 795 YCRHYLQ-GRCHEGEKCNFSHD 815 5****.***********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd06222	1.93E-18	68	189	No hit	No description
SuperFamily	SSF53098	3.03E-7	70	196	IPR012337	Ribonuclease H-like domain
Pfam	PF13456	1.7E-17	70	190	No hit	No description
PROSITE profile	PS50103	14.896	790	817	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.03	791	816	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	8.24E-6	791	815	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.048	819	845	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	10.38	819	843	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.338	844	872	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.08	847	871	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.7E-4	849	870	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1179 aa Download sequence Send to blast
MTYILNRREN VVVWKSIYPF HSRSVTSAVG ARLDWLSART VDSAAVSQLP SVITCVGWHG 60 LPSGSVLCGV DAAFFDEVGA MGVGIVLRDH EGNFIMGKAL KILGRRRVEE GELIGIKEAL 120 AWINELGYVN GVVESDCQKA CDAVNLGGRN ILEMGIIADF CRHELLSLSG FSLCHIKRNR 180 NVIAHNLAKA TRNVNSHHVW NEPPSFVSIY TAVRWAGVSR APTGSLKRQG ERSKSPPPFP 240 TPSFRHRFPG AAQPSPTGGT AQSAITFGLR YCHSVAVLLP PPAVSFARGL VVSATSCGVS 300 ILPMRARQLP LSRSSNSFIP ASQNPTPNSD THPTHQQQPR NSALVYGYSI HESSNADFAA 360 LMEDSLPLHS LILNPSEIAY SFPPHRRRPL PSRTYDALIQ ILSLHRPHLQ MQEPACGEDG 420 FITHSQVIST DILVPHPNSK GSEDQVVQET PDGEGKENNV FQDCDSKHAT TPKLHQPDLA 480 GDSEKQLTPP NEIGIEDYMV VEEKADDCAA QNTKELENVN RVLDIEMDDF GTLKDVELEN 540 DSCFYQFSEV LDSCFGSDVA VESSESRQLS QEKGTVSKEN LVKNMDYELQ MKEMELEKLI 600 YSSGNTEAPL CQNAGEIEEG EISGDAGISG EEALENLHVS EGHFDRDKLL REDTDRGRQQ 660 HKISDPSLVN IANIESNPKN VKNRIPARQL QDYHDLDVLR SSHMKIPKRS DTPRCLDSQT 720 PPGRILLEKD AENQINITTE MDENAGKNKR KRTLTKERRA RKKKKERIKR AEKNRELGVK 780 RLKLPTVLKP KQIVYCRHYL QGRCHEGEKC NFSHDTVPLT KSKPCGHFAR HSCMKGDDCP 840 FDHQLSKYPC NNYTSNGFCS RGSECMFSHE MPAKSPSVAP SASKHDLISQ LQTVPGKEGS 900 HPMPKVNKSE LKSPSQQNNQ NSSRPMDSFG TSHQKVNSRL CSAANSAQRE QLSSKPVPRT 960 GVLAPRGVSF LSNGTVPLGD TDKDKQDGSS AKTIDGVGAG CKGALKMPGA TNELNEMSEG 1020 VAPRKPRGIN FLSFGQPPSD EPTSKILSNL LSTCNDGTHK SAIDDMGKGK QGTGTFNANR 1080 QMNQSAVNLV SEMKANETPP TAAQNVNLLS FNRSRLDASE KSNLDSSKGE TASPSSRGQT 1140 WPLLNTPSSV QKAVRSTLAF AAQLEADVTV GLPHHQRIS

Sequence ? help Back to Top

Protein Sequence Length: 1179 aa Download sequence Send to blast

MTYILNRREN VVVWKSIYPF HSRSVTSAVG ARLDWLSART VDSAAVSQLP SVITCVGWHG  60
LPSGSVLCGV DAAFFDEVGA MGVGIVLRDH EGNFIMGKAL KILGRRRVEE GELIGIKEAL  120
AWINELGYVN GVVESDCQKA CDAVNLGGRN ILEMGIIADF CRHELLSLSG FSLCHIKRNR  180
NVIAHNLAKA TRNVNSHHVW NEPPSFVSIY TAVRWAGVSR APTGSLKRQG ERSKSPPPFP  240
TPSFRHRFPG AAQPSPTGGT AQSAITFGLR YCHSVAVLLP PPAVSFARGL VVSATSCGVS  300
ILPMRARQLP LSRSSNSFIP ASQNPTPNSD THPTHQQQPR NSALVYGYSI HESSNADFAA  360
LMEDSLPLHS LILNPSEIAY SFPPHRRRPL PSRTYDALIQ ILSLHRPHLQ MQEPACGEDG  420
FITHSQVIST DILVPHPNSK GSEDQVVQET PDGEGKENNV FQDCDSKHAT TPKLHQPDLA  480
GDSEKQLTPP NEIGIEDYMV VEEKADDCAA QNTKELENVN RVLDIEMDDF GTLKDVELEN  540
DSCFYQFSEV LDSCFGSDVA VESSESRQLS QEKGTVSKEN LVKNMDYELQ MKEMELEKLI  600
YSSGNTEAPL CQNAGEIEEG EISGDAGISG EEALENLHVS EGHFDRDKLL REDTDRGRQQ  660
HKISDPSLVN IANIESNPKN VKNRIPARQL QDYHDLDVLR SSHMKIPKRS DTPRCLDSQT  720
PPGRILLEKD AENQINITTE MDENAGKNKR KRTLTKERRA RKKKKERIKR AEKNRELGVK  780
RLKLPTVLKP KQIVYCRHYL QGRCHEGEKC NFSHDTVPLT KSKPCGHFAR HSCMKGDDCP  840
FDHQLSKYPC NNYTSNGFCS RGSECMFSHE MPAKSPSVAP SASKHDLISQ LQTVPGKEGS  900
HPMPKVNKSE LKSPSQQNNQ NSSRPMDSFG TSHQKVNSRL CSAANSAQRE QLSSKPVPRT  960
GVLAPRGVSF LSNGTVPLGD TDKDKQDGSS AKTIDGVGAG CKGALKMPGA TNELNEMSEG  1020
VAPRKPRGIN FLSFGQPPSD EPTSKILSNL LSTCNDGTHK SAIDDMGKGK QGTGTFNANR  1080
QMNQSAVNLV SEMKANETPP TAAQNVNLLS FNRSRLDASE KSNLDSSKGE TASPSSRGQT  1140
WPLLNTPSSV QKAVRSTLAF AAQLEADVTV GLPHHQRIS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	749	764	RKRTLTKERRARKKKK
2	757	765	RRARKKKKE
3	760	765	RKKKKE
4	760	782	RKKKKERIKRAEKNRELGVKRLK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011093751.1	0.0	uncharacterized protein LOC105173629
TrEMBL	A0A4D9AH42	0.0	A0A4D9AH42_SALSN; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7740	17	20