PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00015437-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family LBD
Protein Properties Length: 1901aa    MW: 215051 Da    PI: 5.69
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00015437-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260107.21.3e-33161617171100
                 DUF260    1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal..peeeredamsslvyeAearardPvyGavgvilklq 84  
                             aCaaCk++rr+C+++C lap fpa+qpk f+nvh+lFG++n+++llk+l  +++++ +am+s+ ++A +r + Pv G++  i++l+
  SMil_00015437-RA_Salv 1616 ACAACKYQRRRCTPECLLAPFFPADQPKMFQNVHRLFGVKNIQNLLKELgpDHHQKATAMKSIKFHATMRDKYPVWGCMVEIQHLT 1701
                             7************************************************755666999**************************** PP

                 DUF260   85 qqleqlkaelallkee 100 
                              q++ ++ el+++ ++
  SMil_00015437-RA_Salv 1702 YQIQLAEDELQAVLHQ 1717
                             **********998776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.102.4E-670189IPR011990Tetratricopeptide-like helical domain
PfamPF047812.0E-3576186IPR006866Domain of unknown function DUF627, N-terminal
PfamPF047801.6E-174319860IPR006865Domain of unknown function DUF629
PROSITE patternPS000280376397IPR007087Zinc finger, C2H2
SuperFamilySSF540013.73E-3312641591No hitNo description
PROSITE profilePS5023520.97712661593IPR028889Ubiquitin specific protease domain
PfamPF004439.6E-2212661590IPR001394Peptidase C19, ubiquitin carboxyl-terminal hydrolase
CDDcd022572.20E-1513581591No hitNo description
PROSITE profilePS5089122.56416151718IPR004883Lateral organ boundaries, LOB
PfamPF031955.4E-3216161714IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016579Biological Processprotein deubiquitination
GO:0005515Molecular Functionprotein binding
GO:0036459Molecular Functionthiol-dependent ubiquitinyl hydrolase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1901 aa     Download sequence    Send to blast
AKRRSSLQTI PTAVCGGGRG RCRRCQRWGS ILENSPNPSG KKIAKSHPAD SEGNGNSNSN  60
ANPCSPYASI KLECERALTA LRRGNHTKAL RLMKDLCSRH ENSTHSALIH RVQGTVCVKV  120
ASIIDDPNAK QRHLKNAIES ARKAVDLCPN SIEFAHFYAN LLYEAANEGK EYEDVVKECE  180
RALAIDNPVD PAKESLQAEN QQKISTAEAR VANVQSELKS LIQKSNIASI STWMKNLSNG  240
DEKFRLIPIR KMPEDPMEIR LIQAKRPNEI KKVAKTDEER RKQIEGVDSC PGTGQRTGER  300
RRHGNSRKNA SSDERRDWVR SYWNSMSLDA KKDLLRIEIS QLKAHFSSLK DVSPSDVLNE  360
ALSFGVTNKM WKFWSCCRCN EKFADVDLFM QHVVEEHMGS LLPKMQSILP QCVENEWAEM  420
LLNCAWKPLE LNTVIRMHRK QSTLEAPDFF EEPYSRHGMD DSKECFVDTY SNEYEWDSPG  480
NKRPGDNFND GAQDGRDFED VEWMDCDGDQ NSKGSLLNEN WPLSDDPERA KLLEKIQVIF  540
QSLIRNKYLS SSHLSKVIHF AVEELQSLAC SSQLLSSNLD QTPLCICFLG APELKKILKF  600
LQEISHSCGL SRYSDKSNAA DNSNTGMHGV DFVEKMIFSQ DALFLMLDEH FLPCKVPRVS  660
SDDTVSCSSV DTSSHVYENG IVLDSDALLS WIFKGPSSGE QLTSWMRAKE EKAQQGLEIL  720
QLLEKESYHL QGLCERKFEQ LNYEEALQAV EDLCLEEGKR REHVTDFVRR SYDSVLRRRQ  780
EDLGGNENEN ENDMAIMNNR FELQAIKNVL KDAESLNVNQ FGFEETYSGV RSHLCDLESG  840
EDDDWRTKDY LHQVDSCIEV AIQRQKEHDF SVIQISKLDA RIMRILVGMQ KLEIELDPAS  900
SHDYRSILIP LLKSFLRARL EDLAEKDARE KSDAAREAFL AELALDSKKG ITAGVDNSKH  960
EKSKEKKKSK EVRKTKDSKA SHWDEPHDQI SGEILLPSGH DEEVACSEFA ENGTDEDLRL  1020
QEEEYKRKIE LEAEERKLEE TLEYQRRIEN EAKQKHLAEQ HKKTSKVAGE KAKLISTSDS  1080
YFRCNDGEKD VNGQWTNRKE PSIQKEALTE SVLSDSSDGA VMRNGLSNGT IPQPQEGGFT  1140
EQRSAKRGKR HKALNKPSDR KSPPLTSEKE DNGSVQPRHE LNLHGDGDNG GKTLRQLQAE  1200
EDDEERFQAD LKKAVRQSLD ALHAHKNLPV KPSLVLPHKG IPETSDSCVS CGEGVTDVNG  1260
MDTYGTGLKN EVGEYNCFLN VIIQSLWHLR RFREEFMRRS VSEHVHVGDP CVICALYEIF  1320
IALSMVSKDN QREPVAPTSL RVALSNLYPD SNFFQEGQMN DASEVLGVIF NCLHRSFTPG  1380
PHASDVEPVD RAGTDSWDCT NASCIAHSLF GMNISERMDC YNCSLESRCL KYTSFFHNIN  1440
ASAVMCPESS FDELLYLVEM NHQLACDPEA GGCGKLNYIH HILSSPPHVF TTVLGWQNTC  1500
ESVDDIMGTL AALSTEIDIS VLYRGLDPKH KRQLVSVVCY YGQHYHCFAY SSDHEQWIMY  1560
DDKTVKVIGG WNDVLTMCER GHLQPQVLLY EATKTQDHRI INENWRMTIK SGTGQACAAC  1620
KYQRRRCTPE CLLAPFFPAD QPKMFQNVHR LFGVKNIQNL LKELGPDHHQ KATAMKSIKF  1680
HATMRDKYPV WGCMVEIQHL TYQIQLAEDE LQAVLHQIAF YRQQQQHQHQ PQQDHPLSPT  1740
AADDYISDLQ LGMAPPGNDA AAFAQQQQVV SYSNSSNGGG GDYGINYLDF KEMNSVVNSM  1800
CQQAYSNISN DNNPNSVVTQ SHHLMMHAQP LHQPPPQDDA EMQPFFDNID DTQSYIGSKE  1860
AYDQSSLSLE SPLKDSRQLV EEIDENELKS AAACFSLTSV N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-25161217217114LOB family transfactor Ramosa2.1
5ly0_B4e-25161217217114LOB family transfactor Ramosa2.1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11725GRGRCRRCQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087199.10.0uncharacterized protein LOC105168755 isoform X1
RefseqXP_011087200.10.0uncharacterized protein LOC105168755 isoform X1
TrEMBLA0A4D9B5700.0A0A4D9B570_SALSN; Uncharacterized protein
STRINGMigut.I00114.1.p0.0(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.11e-38LOB domain-containing protein 27