PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00015437-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | LBD | ||||||||
Protein Properties | Length: 1901aa MW: 215051 Da PI: 5.69 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 107.2 | 1.3e-33 | 1616 | 1717 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal..peeeredamsslvyeAearardPvyGavgvilklq 84 aCaaCk++rr+C+++C lap fpa+qpk f+nvh+lFG++n+++llk+l +++++ +am+s+ ++A +r + Pv G++ i++l+ SMil_00015437-RA_Salv 1616 ACAACKYQRRRCTPECLLAPFFPADQPKMFQNVHRLFGVKNIQNLLKELgpDHHQKATAMKSIKFHATMRDKYPVWGCMVEIQHLT 1701 7************************************************755666999**************************** PP DUF260 85 qqleqlkaelallkee 100 q++ ++ el+++ ++ SMil_00015437-RA_Salv 1702 YQIQLAEDELQAVLHQ 1717 **********998776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.25.40.10 | 2.4E-6 | 70 | 189 | IPR011990 | Tetratricopeptide-like helical domain |
Pfam | PF04781 | 2.0E-35 | 76 | 186 | IPR006866 | Domain of unknown function DUF627, N-terminal |
Pfam | PF04780 | 1.6E-174 | 319 | 860 | IPR006865 | Domain of unknown function DUF629 |
PROSITE pattern | PS00028 | 0 | 376 | 397 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF54001 | 3.73E-33 | 1264 | 1591 | No hit | No description |
PROSITE profile | PS50235 | 20.977 | 1266 | 1593 | IPR028889 | Ubiquitin specific protease domain |
Pfam | PF00443 | 9.6E-22 | 1266 | 1590 | IPR001394 | Peptidase C19, ubiquitin carboxyl-terminal hydrolase |
CDD | cd02257 | 2.20E-15 | 1358 | 1591 | No hit | No description |
PROSITE profile | PS50891 | 22.564 | 1615 | 1718 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.4E-32 | 1616 | 1714 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016579 | Biological Process | protein deubiquitination | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0036459 | Molecular Function | thiol-dependent ubiquitinyl hydrolase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1901 aa Download sequence Send to blast |
AKRRSSLQTI PTAVCGGGRG RCRRCQRWGS ILENSPNPSG KKIAKSHPAD SEGNGNSNSN 60 ANPCSPYASI KLECERALTA LRRGNHTKAL RLMKDLCSRH ENSTHSALIH RVQGTVCVKV 120 ASIIDDPNAK QRHLKNAIES ARKAVDLCPN SIEFAHFYAN LLYEAANEGK EYEDVVKECE 180 RALAIDNPVD PAKESLQAEN QQKISTAEAR VANVQSELKS LIQKSNIASI STWMKNLSNG 240 DEKFRLIPIR KMPEDPMEIR LIQAKRPNEI KKVAKTDEER RKQIEGVDSC PGTGQRTGER 300 RRHGNSRKNA SSDERRDWVR SYWNSMSLDA KKDLLRIEIS QLKAHFSSLK DVSPSDVLNE 360 ALSFGVTNKM WKFWSCCRCN EKFADVDLFM QHVVEEHMGS LLPKMQSILP QCVENEWAEM 420 LLNCAWKPLE LNTVIRMHRK QSTLEAPDFF EEPYSRHGMD DSKECFVDTY SNEYEWDSPG 480 NKRPGDNFND GAQDGRDFED VEWMDCDGDQ NSKGSLLNEN WPLSDDPERA KLLEKIQVIF 540 QSLIRNKYLS SSHLSKVIHF AVEELQSLAC SSQLLSSNLD QTPLCICFLG APELKKILKF 600 LQEISHSCGL SRYSDKSNAA DNSNTGMHGV DFVEKMIFSQ DALFLMLDEH FLPCKVPRVS 660 SDDTVSCSSV DTSSHVYENG IVLDSDALLS WIFKGPSSGE QLTSWMRAKE EKAQQGLEIL 720 QLLEKESYHL QGLCERKFEQ LNYEEALQAV EDLCLEEGKR REHVTDFVRR SYDSVLRRRQ 780 EDLGGNENEN ENDMAIMNNR FELQAIKNVL KDAESLNVNQ FGFEETYSGV RSHLCDLESG 840 EDDDWRTKDY LHQVDSCIEV AIQRQKEHDF SVIQISKLDA RIMRILVGMQ KLEIELDPAS 900 SHDYRSILIP LLKSFLRARL EDLAEKDARE KSDAAREAFL AELALDSKKG ITAGVDNSKH 960 EKSKEKKKSK EVRKTKDSKA SHWDEPHDQI SGEILLPSGH DEEVACSEFA ENGTDEDLRL 1020 QEEEYKRKIE LEAEERKLEE TLEYQRRIEN EAKQKHLAEQ HKKTSKVAGE KAKLISTSDS 1080 YFRCNDGEKD VNGQWTNRKE PSIQKEALTE SVLSDSSDGA VMRNGLSNGT IPQPQEGGFT 1140 EQRSAKRGKR HKALNKPSDR KSPPLTSEKE DNGSVQPRHE LNLHGDGDNG GKTLRQLQAE 1200 EDDEERFQAD LKKAVRQSLD ALHAHKNLPV KPSLVLPHKG IPETSDSCVS CGEGVTDVNG 1260 MDTYGTGLKN EVGEYNCFLN VIIQSLWHLR RFREEFMRRS VSEHVHVGDP CVICALYEIF 1320 IALSMVSKDN QREPVAPTSL RVALSNLYPD SNFFQEGQMN DASEVLGVIF NCLHRSFTPG 1380 PHASDVEPVD RAGTDSWDCT NASCIAHSLF GMNISERMDC YNCSLESRCL KYTSFFHNIN 1440 ASAVMCPESS FDELLYLVEM NHQLACDPEA GGCGKLNYIH HILSSPPHVF TTVLGWQNTC 1500 ESVDDIMGTL AALSTEIDIS VLYRGLDPKH KRQLVSVVCY YGQHYHCFAY SSDHEQWIMY 1560 DDKTVKVIGG WNDVLTMCER GHLQPQVLLY EATKTQDHRI INENWRMTIK SGTGQACAAC 1620 KYQRRRCTPE CLLAPFFPAD QPKMFQNVHR LFGVKNIQNL LKELGPDHHQ KATAMKSIKF 1680 HATMRDKYPV WGCMVEIQHL TYQIQLAEDE LQAVLHQIAF YRQQQQHQHQ PQQDHPLSPT 1740 AADDYISDLQ LGMAPPGNDA AAFAQQQQVV SYSNSSNGGG GDYGINYLDF KEMNSVVNSM 1800 CQQAYSNISN DNNPNSVVTQ SHHLMMHAQP LHQPPPQDDA EMQPFFDNID DTQSYIGSKE 1860 AYDQSSLSLE SPLKDSRQLV EEIDENELKS AAACFSLTSV N |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-25 | 1612 | 1721 | 7 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-25 | 1612 | 1721 | 7 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 17 | 25 | GRGRCRRCQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011087199.1 | 0.0 | uncharacterized protein LOC105168755 isoform X1 | ||||
Refseq | XP_011087200.1 | 0.0 | uncharacterized protein LOC105168755 isoform X1 | ||||
TrEMBL | A0A4D9B570 | 0.0 | A0A4D9B570_SALSN; Uncharacterized protein | ||||
STRING | Migut.I00114.1.p | 0.0 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 1e-38 | LOB domain-containing protein 27 |