PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SMil_00015434-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 256aa MW: 29015.1 Da PI: 7.6734 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 100 | 4.2e-31 | 31 | 182 | 2 | 105 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........................ 65 g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl +ak +i+el+ + SMil_00015434-RA_Salv 31 MGGKDRHSKVCTVRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLDAAKNEIDELPPLqipqgicfsqmlnpnqkhllstst 118 579*************************************************************777777766666655555443221 PP TCP 66 ..ssssaseceaesssssasnsssg...............................................kaaksaakskksqksa 104 + + ++++++ q+++ SMil_00015434-RA_Salv 119 stH---------------------RseeeenpssfaslmsssasygrwdpsislglaatahhqhgdfvshqhQ----HQHQHQHQHQH 181 110.....................0112222333344555566777888877788776665544433322110....11111111111 PP TCP 105 a 105 + SMil_00015434-RA_Salv 182 Q 182 1 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 31.353 | 33 | 91 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.5E-32 | 33 | 188 | IPR005333 | Transcription factor, TCP |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0009507 | Cellular Component | chloroplast |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 256 aa Download sequence Send to blast |
MIPKEQAKQE SSSTTWSRLK DPRIVRVSRA MGGKDRHSKV CTVRGLRDRR VRLSVPTAIQ 60 LYDLQDRLGL NQPSKVVDWL LDAAKNEIDE LPPLQIPQGI CFSQMLNPNQ KHLLSTSTST 120 HRSEEEENPS SFASLMSSSA SYGRWDPSIS LGLAATAHHQ HGDFVSHQHQ HQHQHQHQHQ 180 HQHQHQHQHQ LLVYQSAQPY FVPQINAAFD TKHHPSFHGS DLSSSSHVRP FDFNTTADLL 240 PSQSSDADDQ NKPNLV |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-18 | 38 | 92 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 2e-18 | 38 | 92 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00326 | DAP | Transfer from AT3G02150 | Download |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006338357.1 | 6e-61 | PREDICTED: transcription factor TCP17 | ||||
TrEMBL | A0A4D9BZV8 | 3e-93 | A0A4D9BZV8_SALSN; Uncharacterized protein | ||||
STRING | PGSC0003DMT400003453 | 2e-60 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA821 | 24 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G02150.1 | 2e-45 | plastid transcription factor 1 |