PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00015339-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | MYB_related | ||||||||
Protein Properties | Length: 217aa MW: 24557.3 Da PI: 6.5034 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.9 | 4.7e-08 | 8 | 30 | 22 | 46 |
T-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqk 46 + W+ Ia+ ++ gRt++++k++w++ SMil_00015339-RA_Salv 8 R-WSIIAAQLP-GRTDNDIKNYWNT 30 5.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.071 | 1 | 36 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.04E-7 | 6 | 36 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.1E-11 | 8 | 33 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.37E-6 | 8 | 32 | No hit | No description |
Pfam | PF00249 | 4.9E-6 | 8 | 30 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MGICLKFRWS IIAAQLPGRT DNDIKNYWNT KLKKKLMGLI PSNHTKYSQP PFSNTFQTHP 60 HSLSTISQLY RDFNSFYLQT AKSLAPVLEP IPSSSLYSDT FSLTTSQYPY LPQTNQEPLP 120 DLCNNMLVFG GNEASCSSSD SRDHHHHRVK QEEIACGFQG FYGGFDQENH KFMLHDAFLD 180 DQKPSGINLI GGDGGSSGLV FNHDEGKSDE RETLYYY |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011090100.1 | 9e-38 | transcription factor RAX2-like | ||||
TrEMBL | A0A4D9BB91 | 1e-61 | A0A4D9BB91_SALSN; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA18298 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56110.1 | 8e-16 | myb domain protein 103 |