PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00015326-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family GATA
Protein Properties Length: 263aa    MW: 28812.7 Da    PI: 5.7523
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00015326-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.71.4e-17191224134
                   GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                            C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  SMil_00015326-RA_Salv 191 CLHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 224
                            99*****************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.7E-742262IPR016679Transcription factor, GATA, plant
SMARTSM004011.9E-15185235IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.477185221IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.2E-14189222IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577165.23E-15189248No hitNo description
CDDcd002021.14E-13190237No hitNo description
PROSITE patternPS003440191216IPR000679Zinc finger, GATA-type
PfamPF003202.9E-15191224IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MEPELIDEIE CGNFFDQMDD LIEFPPDNEC GDDANIVSSS DFPTWDEALQ GCDTLFSGSP  60
ASDLAAELSV PYEDIVQLEW LSTFVEDSFS GGGLTVGKEK KEQLSPVSVV ESSTSSSSSS  120
AVPLSPRHRG PQRARSKRPR PPMFNPRPAI QLISPASSES NSFAESSPLK KSKKIKITLP  180
ATPTPQPLRK CLHCEITKTP QWRAGPMGPK TLCNACGVRY KSGRLFPEYR PAASPTFVPS  240
LHSNSHKKVI EMRCKVEPMI TSL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136140KRPRP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076972.11e-118GATA transcription factor 8-like
RefseqXP_011076974.11e-118GATA transcription factor 8-like
TrEMBLA0A4D8ZQU91e-137A0A4D8ZQU9_SALSN; Uncharacterized protein
STRINGMigut.F01981.1.p1e-107(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23452358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.22e-41GATA family protein