PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00015326-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | GATA | ||||||||
Protein Properties | Length: 263aa MW: 28812.7 Da PI: 5.7523 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 54.7 | 1.4e-17 | 191 | 224 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C +C tkTp+WR gp g+ktLCnaCG++y++ + SMil_00015326-RA_Salv 191 CLHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 224 99*****************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 3.7E-74 | 2 | 262 | IPR016679 | Transcription factor, GATA, plant |
SMART | SM00401 | 1.9E-15 | 185 | 235 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.477 | 185 | 221 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.2E-14 | 189 | 222 | IPR013088 | Zinc finger, NHR/GATA-type |
SuperFamily | SSF57716 | 5.23E-15 | 189 | 248 | No hit | No description |
CDD | cd00202 | 1.14E-13 | 190 | 237 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 191 | 216 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 2.9E-15 | 191 | 224 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MEPELIDEIE CGNFFDQMDD LIEFPPDNEC GDDANIVSSS DFPTWDEALQ GCDTLFSGSP 60 ASDLAAELSV PYEDIVQLEW LSTFVEDSFS GGGLTVGKEK KEQLSPVSVV ESSTSSSSSS 120 AVPLSPRHRG PQRARSKRPR PPMFNPRPAI QLISPASSES NSFAESSPLK KSKKIKITLP 180 ATPTPQPLRK CLHCEITKTP QWRAGPMGPK TLCNACGVRY KSGRLFPEYR PAASPTFVPS 240 LHSNSHKKVI EMRCKVEPMI TSL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 136 | 140 | KRPRP |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011076972.1 | 1e-118 | GATA transcription factor 8-like | ||||
Refseq | XP_011076974.1 | 1e-118 | GATA transcription factor 8-like | ||||
TrEMBL | A0A4D8ZQU9 | 1e-137 | A0A4D8ZQU9_SALSN; Uncharacterized protein | ||||
STRING | Migut.F01981.1.p | 1e-107 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2345 | 23 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54810.2 | 2e-41 | GATA family protein |