PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00015310-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family SBP
Protein Properties Length: 330aa    MW: 37610.9 Da    PI: 8.088
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00015310-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.31.4e-4078155178
                            --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                    SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                            +CqvegC+ dl+ ak+yhrrh++Ce+hsk+p+v+v+g+e+rfCqqCsrfh+lsefD++krsCrrrL++hn+rrr+ q+
  SMil_00015310-RA_Salv  78 CCQVEGCNLDLKLAKDYHRRHRICETHSKSPKVIVAGMERRFCQQCSRFHDLSEFDDKKRSCRRRLSDHNARRRRVQP 155
                            6**************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.3E-3473140IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.19776153IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.15E-3877158IPR004333Transcription factor, SBP-box
PfamPF031103.8E-3279152IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MEGDSAGLEW ENLALFSSKP LHPFSMSTDF YHDPDLSLGR HPFASPSPSP APSSIPVSVS  60
STPTKRSRAS YHNMQNPCCQ VEGCNLDLKL AKDYHRRHRI CETHSKSPKV IVAGMERRFC  120
QQCSRFHDLS EFDDKKRSCR RRLSDHNARR RRVQPESIQL TSAPALYTDQ RQQQQQQQQQ  180
QQQQNVLLNG LPVSSWENSM SRHALLRPPK LNEDLLLHMD PIHRSTPRIL DQCVHNNSSM  240
APDLLSAHSL LSSNSWSLNE GESSSSMEGI VMRHPDPDSH HFQTNNIGLD QPPLLHSVNM  300
HNAASSHHQE YQLFKSPYHS GNFYSTQRSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-29791521184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134151KKRSCRRRLSDHNARRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011093932.18e-82squamosa promoter-binding-like protein 12
TrEMBLA0A2I6SET74e-81A0A2I6SET7_9ROSI; SBP-box transcription factor
STRINGVIT_11s0065g00170.t019e-74(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA136441216
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.36e-42squamosa promoter binding protein-like 2