PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00015288-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 327aa    MW: 35797.9 Da    PI: 5.6767
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00015288-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.64.8e-21171220255
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  SMil_00015288-RA_Salv 171 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDEAAYKLRG 220
                            59******9.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.06E-33170230No hitNo description
SuperFamilySSF541713.6E-23171229IPR016177DNA-binding domain
SMARTSM003801.4E-37171234IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-32171229IPR001471AP2/ERF domain
PROSITE profilePS5103223.222171228IPR001471AP2/ERF domain
PfamPF008479.3E-15172220IPR001471AP2/ERF domain
PRINTSPR003673.0E-11172183IPR001471AP2/ERF domain
PRINTSPR003673.0E-11194210IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MAATMNFWSS SADVDPFIGG ELMEALEPFM KSANSSPISP CSNLTSPSSF PPSSSSSFPS  60
YSNDQFFSTQ TEPSSPSSFF PSNSYYSSPQ FEPSLYQDQA QAQYSFGLAQ NPHSTMGLGL  120
NPISPVQIQD IQAQISYPAA QYPYPPPAPH GLGPRAVCMK QTGSPPKPAK LYRGVRQRHW  180
GKWVAEIRLP KNRTRLWLGT FDTAEEAALA YDEAAYKLRG DYARLNFPHL RHSIGEYKPL  240
HAAVDAKLSA ICQTLAEGKS IDAKKGAKAS RPKKAAAAAV KTAEPESDGS GPESELVFPE  300
FEEEERFGLD FGSLEKYPSY EIDWSAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-20169236370ATERF1
3gcc_A4e-20169236370ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0089375e-51BT008937.1 Triticum aestivum clone wdi1c.pk004.g19:fis, full insert mRNA sequence.
GenBankBT0092435e-51BT009243.1 Triticum aestivum clone wlk1.pk0014.f4:fis, full insert mRNA sequence.
GenBankDQ3344085e-51DQ334408.1 Triticum aestivum drought-responsive factor-like transcription factor DRFL1b (DRFL1b) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011074161.11e-113ethylene-responsive transcription factor RAP2-13
TrEMBLA0A4D8ZWL31e-145A0A4D8ZWL3_SALSN; EREBP-like factor
STRINGMigut.N02912.1.p1e-104(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16102471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.18e-48related to AP2 4