PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00015286-RA_Salv | ||||||||
Common Name | MYB29 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | MYB | ||||||||
Protein Properties | Length: 295aa MW: 32757.7 Da PI: 6.5158 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.7 | 5.6e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++q+G+g+W++++ g+ R+ k+c++rw +yl SMil_00015286-RA_Salv 14 KGPWTPEEDIILVSYIQQHGPGNWRAVPTNTGLLRCSKSCRLRWTNYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 49.8 | 8e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+ E++ ++++ ++lG++ W++Ia++++ Rt++++k++w+++l SMil_00015286-RA_Salv 67 RGNFTEHEEKMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-23 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.276 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.18E-31 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.00E-11 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-24 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.4E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.451 | 66 | 116 | IPR017930 | Myb domain |
Pfam | PF00249 | 2.1E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.82E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0010468 | Biological Process | regulation of gene expression | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MGRPPCCDKI GVKKGPWTPE EDIILVSYIQ QHGPGNWRAV PTNTGLLRCS KSCRLRWTNY 60 LRPGIRRGNF TEHEEKMIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLGKIQ 120 GQEENGGKGN SSDSKSISKG QWERRLQTDI HMAKQALCEA LSLDKPSAMA ESVAQPNESV 180 QTSTYASSTE NIARLLQNWM KKSPNSSEAV SSDSSSFNNN NFSAGLSSSP SEGAISTTFL 240 SFNSSESAVE VDHEPKFETQ MPLTLLEKWL LDDAAAQGQE GDFMEMALAE TADLF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-25 | 14 | 116 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 2e-25 | 14 | 116 | 27 | 128 | MYB TRANSFORMING PROTEIN |
1mse_C | 2e-25 | 14 | 116 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 2e-25 | 14 | 116 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00579 | DAP | Transfer from AT5G62470 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF059383 | 0.0 | KF059383.1 Salvia miltiorrhiza MYB-related transcription factor (MYB29) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011071639.1 | 1e-166 | myb-related protein 306 | ||||
Swissprot | P81392 | 1e-139 | MYB06_ANTMA; Myb-related protein 306 | ||||
TrEMBL | A0A059PRE3 | 0.0 | A0A059PRE3_SALMI; MYB-related transcription factor | ||||
STRING | Migut.I00176.1.p | 1e-142 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47600.1 | 1e-108 | myb domain protein 94 |
Publications ? help Back to Top | |||
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