PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00015267-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

bZIP

Protein Properties

Length: 477aa MW: 52808.2 Da PI: 7.2396

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00015267-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.8	3.2e-10	173	202	4	33
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee 33 k rr+++NReAAr+sR+RKka++++Le SMil_00015267-RA_Salv 173 AKTLRRLAQNREAARKSRLRKKAYVQQLES 202 5889************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.0E-5	170	247	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.0E-7	172	216	No hit	No description
PROSITE profile	PS50217	9.117	172	216	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.4E-7	173	208	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.93E-6	174	216	No hit	No description
PROSITE pattern	PS00036	0	177	192	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	7.8E-33	255	330	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence Send to blast
MASHRVGEAD SGAPHHHHIP YAIPHMLHHP NNSTFINQEG SAFDFGELEE AIILQGVKIN 60 NDDKKQPLYT AIRPAATLDM FPSWPMRFQQ HTLRGSSKSG EESTDSGSAV NTLSNTPESP 120 SDHRQPPPPP PQMDAAGGID SPRLSGSHSQ PAAKPAPEKR RGPGSNSDKV LDAKTLRRLA 180 QNREAARKSR LRKKAYVQQL ESSRIRLAQL EQDLQRARSQ GLFLGGGGAA SGSISSGGAI 240 FDMEYSRWLD DDHRHMSELR TALQAHLSDG DLRVIVDGYI AHYDEVFRLK GAAAKSDVFH 300 LITGMWTTPA ERCFLWMGGF RPSDLIKMLI PQLDPLTEQQ FMGICSLQHS SQQAEEALSQ 360 GLEQLQQSLV DTIANGSAND SMHHMAVALG KLANLEGFVR QADNLRQQTL HQLHRLLTIR 420 QAARCFLVIG EYYGRLRALS SLWASRPRES MIADDNSCQT TTDLQMVQSS QNQFSNF

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence Send to blast

MASHRVGEAD SGAPHHHHIP YAIPHMLHHP NNSTFINQEG SAFDFGELEE AIILQGVKIN  60
NDDKKQPLYT AIRPAATLDM FPSWPMRFQQ HTLRGSSKSG EESTDSGSAV NTLSNTPESP  120
SDHRQPPPPP PQMDAAGGID SPRLSGSHSQ PAAKPAPEKR RGPGSNSDKV LDAKTLRRLA  180
QNREAARKSR LRKKAYVQQL ESSRIRLAQL EQDLQRARSQ GLFLGGGGAA SGSISSGGAI  240
FDMEYSRWLD DDHRHMSELR TALQAHLSDG DLRVIVDGYI AHYDEVFRLK GAAAKSDVFH  300
LITGMWTTPA ERCFLWMGGF RPSDLIKMLI PQLDPLTEQQ FMGICSLQHS SQQAEEALSQ  360
GLEQLQQSLV DTIANGSAND SMHHMAVALG KLANLEGFVR QADNLRQQTL HQLHRLLTIR  420
QAARCFLVIG EYYGRLRALS SLWASRPRES MIADDNSCQT TTDLQMVQSS QNQFSNF

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011088884.1	0.0	transcription factor TGA9 isoform X2
Swissprot	Q93XM6	0.0	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A4D8ZWL6	0.0	A0A4D8ZWL6_SALSN; Transcription factor TGA
STRING	EOY33449	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3683	23	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-172	bZIP family protein

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]