PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00015205-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | B3 | ||||||||
Protein Properties | Length: 230aa MW: 26684.9 Da PI: 10.3835 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 55.9 | 7.6e-18 | 11 | 102 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr 87 ffkvl s+v ++l+lp +f++++++ + +++l++ d sgr+W+v++ ++ +++ + +t+GW++F+++ Lk g+f+vF+l + SMil_00015205-RA_Salv 11 FFKVL--SNVDYIKLLRLPPNFLRKYELTLPANVKLRVDD-SGRRWNVRV--ERMDDGlFCFTNGWEKFAEDAALKFGEFLVFSLLAK 93 99***..556666669**********98877777777555.*********..7777777*************************9874 PP SEE..EEEEE- CS B3 88 sefelvvkvfr 98 se l+v +++ SMil_00015205-RA_Salv 94 SE--LNVDIYE 102 44..5888776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 9.3E-22 | 5 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.75E-21 | 6 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.11E-16 | 9 | 101 | No hit | No description |
PROSITE profile | PS50863 | 13.747 | 9 | 104 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.6E-15 | 11 | 102 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.6E-16 | 11 | 104 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.71E-9 | 130 | 220 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 7.1E-8 | 133 | 220 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 8.36 | 134 | 230 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.021 | 136 | 229 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MSGRSNETPS FFKVLSNVDY IKLLRLPPNF LRKYELTLPA NVKLRVDDSG RRWNVRVERM 60 DDGLFCFTNG WEKFAEDAAL KFGEFLVFSL LAKSELNVDI YETSCCKREI PLVELNAQGG 120 KARKRNCFMK EGNPLYFATY LRPYHRWTIS LPRAFSRAAN MKVKKQVRVK YVGKRRGLCV 180 ALSHRPPRPT IDLAKGWREF REANGLVVGK IYSFEFNPDD QVIYVNRVAS |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6635 | 9 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66980.1 | 3e-14 | B3 family protein |