PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00015204-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | B3 | ||||||||
Protein Properties | Length: 258aa MW: 29736.1 Da PI: 9.2048 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.6 | 2.3e-18 | 20 | 100 | 12 | 98 |
HTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 + ++l++p kf+ ++ + + ++le+e + W+vk+ ++ + +++t+GW+eFvk+n++ e+Df++F+l+++s f +v+++r SMil_00015204-RA_Salv 20 S-SNLCIPTKFMMKYRQAVQ--HSVVLETEYSpTLWDVKI--KNLNSDFYMTDGWSEFVKDNQVGERDFLTFRLMSESAF--KVSIYR 100 3.459**********54433..36*****877699*****..888888***************************99999..888877 PP | |||||||
2 | B3 | 31.6 | 2.9e-10 | 158 | 234 | 10 | 89 |
HHHTT-EE--HHH.HTT---..--SEEEEEE....TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 10 vlksgrlvlpkkfaeehggkkeesktltled....esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 + r+ lp kf ++ ++k ++ ++++e ++g s v r r+ l kGW eF angL+ gD++ F+++ +e SMil_00015204-RA_Salv 158 NK--TRINLPQKFSKAANMKVKK--QVRMEYvgngRHGVSVAVDA--RPENYRVDLVKGWPEFRVANGLEPGDSCSFEFNP-DE 234 33..4689*****9887444333..35555510114445555555..6666669999*********************754.33 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.14E-19 | 7 | 104 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.788 | 8 | 102 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.3E-11 | 11 | 102 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-19 | 14 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.80E-13 | 19 | 100 | No hit | No description |
Pfam | PF02362 | 8.4E-16 | 20 | 100 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-11 | 141 | 234 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.69E-12 | 144 | 234 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.85E-7 | 147 | 240 | No hit | No description |
PROSITE profile | PS50863 | 8.825 | 147 | 245 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.018 | 149 | 243 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.5E-8 | 158 | 235 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MPRSEYQRAS FMMFCRGDFS SNLCIPTKFM MKYRQAVQHS VVLETEYSPT LWDVKIKNLN 60 SDFYMTDGWS EFVKDNQVGE RDFLTFRLMS ESAFKVSIYR GDDCTKHLTS PMNSRRRVVD 120 EDESGIRRGR RPCKRKGEGA QFKEGNPLCF KICLKPYNKT RINLPQKFSK AANMKVKKQV 180 RMEYVGNGRH GVSVAVDARP ENYRVDLVKG WPEFRVANGL EPGDSCSFEF NPDEEVIYVR 240 ELLPAMEIKG QGVCAAVV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 129 | 135 | RRPCKRK |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6635 | 9 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31640.1 | 7e-14 | B3 family protein |