PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00015138-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family GATA
Protein Properties Length: 306aa    MW: 33408.9 Da    PI: 5.759
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00015138-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.75.1e-16233269135
                   GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                            C +Cg ++  Tp++Rrgp g++tLCnaCGl+++ kg+
  SMil_00015138-RA_Salv 233 CIHCGISSksTPMMRRGPVGPRTLCNACGLKWANKGV 269
                            99***99889************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.26499134IPR010399Tify domain
SMARTSM009793.5E-999134IPR010399Tify domain
PfamPF062001.1E-11102133IPR010399Tify domain
PfamPF062036.7E-16166208IPR010402CCT domain
PROSITE profilePS5101713.225166208IPR010402CCT domain
PROSITE profilePS501148.946227284IPR000679Zinc finger, GATA-type
SMARTSM004014.8E-11227285IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.5E-13228289No hitNo description
Gene3DG3DSA:3.30.50.105.6E-15231274IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.86E-14232284No hitNo description
PfamPF003201.9E-13233269IPR000679Zinc finger, GATA-type
PROSITE patternPS003440233260IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
LMYGPPHAST MNETSITNDH PTAHLDDDDD DDDDDDNDND NDNDVVHCPN AHDNPSSRIR  60
YDPPNAAHSP HALAVLDTVA SHALYAPDMP PPQGPSAAGD GAADQLTLSF QGEVYVFDSV  120
SPERVQAVLL LLGGYDVPTG IPTPGMTPQS HRNLADYPGR SSQPQRAASL NRFREKRKER  180
CFEKKIRYTV RKDVASRMQR KKGQFTSSKS MLEEPGSSEW NGNSGPEEQE TSCIHCGISS  240
KSTPMMRRGP VGPRTLCNAC GLKWANKGVL RDLSKLPIIM KLNRETKSED TGMHPSTAIT  300
SSSGDN
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087962.11e-138GATA transcription factor 24-like isoform X2
SwissprotQ8H1G02e-72GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A4D8ZBG81e-132A0A4D8ZBG8_SALSN; Uncharacterized protein
STRINGMigut.B00543.1.p1e-121(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26722348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.21e-67ZIM-like 1