PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00015104-RA_Salv

Common Name

MYB52

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

MYB_related

Protein Properties

Length: 250aa MW: 27225.7 Da PI: 6.0575

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00015104-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	62.7	7.1e-20	14	70	1	48
TSSS-HHHHHHHHHHHHHTTTT..........-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..........tWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l ++++++G g tW++Ia +++ gRt++++k++w+++l SMil_00015104-RA_Salv 14 KGPWTPEEDDILTKYIQKHGHGswralprlagTWSAIATHLP-GRTDNEIKNFWNTHL 70 79**************************************.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	21.753	9	74	IPR017930	Myb domain
SuperFamily	SSF46689	2.58E-16	10	80	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.8E-24	12	71	IPR009057	Homeodomain-like
SMART	SM00717	8.9E-17	13	72	IPR001005	SANT/Myb domain
Pfam	PF00249	1.0E-17	14	70	IPR001005	SANT/Myb domain
CDD	cd00167	2.22E-15	16	70	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MGRSPISDDS GVKKGPWTPE EDDILTKYIQ KHGHGSWRAL PRLAGTWSAI ATHLPGRTDN 60 EIKNFWNTHL KKKLIQMGFD PMTHQPRTDL FATLPQLLAL ANLIENPSSW EDQAIRIQSQ 120 ALQMARLNQC LNHLLHPSIP IPNFHTAAAL SDVDAAIFAH LDAPPAHFAH LPDLQAAPCS 180 GVMPQGSDFA GVLPQGENSP PSSSPWLQQT LSPSSSIISN TVDACSASSY GGAAQMWSEL 240 LDDPIFHDIP

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF059406	0.0	KF059406.1 Salvia miltiorrhiza MYB-related transcription factor (MYB52) mRNA, complete cds.
GenBank	KF059516	0.0	KF059516.1 Salvia miltiorrhiza MYB-related transcription factor (MYB52) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011097564.1	2e-98	transcription factor MYB39-like
TrEMBL	A0A059PRR6	1e-174	A0A059PRR6_SALMI; MYB-related transcription factor
STRING	Migut.H02352.1.p	6e-81	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10280.1	1e-53	myb domain protein 92

Publications ? help Back to Top
Li C,Lu S Genome-wide characterization and comparative analysis of R2R3-MYB transcription factors shows the complexity of MYB-associated regulatory networks in Salvia miltiorrhiza. BMC Genomics, 2014. 15: p. 277 [PMID:24725266]