PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00015099-RA_Salv
Common NameMYB93
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB
Protein Properties Length: 162aa    MW: 19065.9 Da    PI: 10.7657
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00015099-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.42.2e-151257348
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +WT++Ede+l+++++ +G  +W+t ++  g+ R++k+c+ rw kyl
  SMil_00015099-RA_Salv 12 AWTKQEDEKLIHYITIHGQARWSTLPKAAGLERCEKSCRQRWIKYL 57
                           7*******************************************97 PP

2Myb_DNA-binding42.12e-1362103447
                            S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            +  +E++l+++++++lG + W++Ia +++ gRt+k++k +w+++
  SMil_00015099-RA_Salv  62 FCVDEEDLIIKLHALLGDR-WSLIAGRLP-GRTEKEVKKYWNSH 103
                            5569*************99.*********.***********987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007178.5E-11959IPR001005SANT/Myb domain
SuperFamilySSF466893.59E-2410100IPR009057Homeodomain-like
PfamPF002492.6E-121257IPR001005SANT/Myb domain
CDDcd001673.84E-81257No hitNo description
Gene3DG3DSA:1.10.10.602.3E-161257IPR009057Homeodomain-like
PROSITE profilePS5009010.1161357IPR017877Myb-like domain
PROSITE profilePS5129419.43854108IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.9E-1858109IPR009057Homeodomain-like
SMARTSM007171.6E-860106IPR001005SANT/Myb domain
PfamPF002493.5E-1264103IPR001005SANT/Myb domain
CDDcd001675.39E-865104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MRRKQNYNKG CAWTKQEDEK LIHYITIHGQ ARWSTLPKAA GLERCEKSCR QRWIKYLKRE  60
NFCVDEEDLI IKLHALLGDR WSLIAGRLPG RTEKEVKKYW NSHIKRKLIR AGIDPNKHRI  120
HQKIIQTTAK SSSSVSSSST DFNLHFQTPI RPRVYSATHQ TK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-181310810108B-MYB
1h8a_C3e-18810826128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18541146, ECO:0000269|PubMed:9839469}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0594470.0KF059447.1 Salvia miltiorrhiza MYB-related transcription factor (MYB93) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027939617.12e-60transcription repressor MYB4-like
SwissprotQ9S9K93e-52MYB3_ARATH; Transcription factor MYB3
TrEMBLA0A059PST41e-117A0A059PST4_SALMI; MYB-related transcription factor
STRINGXP_008797850.12e-58(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.14e-53myb domain protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Li C,Lu S
    Genome-wide characterization and comparative analysis of R2R3-MYB transcription factors shows the complexity of MYB-associated regulatory networks in Salvia miltiorrhiza.
    BMC Genomics, 2014. 15: p. 277
    [PMID:24725266]
  3. Zhou M, et al.
    Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
    Plant J., 2015. 84(2): p. 395-403
    [PMID:26332741]
  4. Wada T,Hayashi N,Tominaga-Wada R
    Root hair formation at the root-hypocotyl junction in CPC-LIKE MYB double and triple mutants of Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1089372
    [PMID:26339713]
  5. Wada T,Tominaga-Wada R
    CAPRICE family genes control flowering time through both promoting and repressing CONSTANS and FLOWERING LOCUS T expression.
    Plant Sci., 2015. 241: p. 260-5
    [PMID:26706076]
  6. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  7. Zhou M, et al.
    LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
    Plant Physiol., 2017. 174(3): p. 1348-1358
    [PMID:28483877]
  8. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]