PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00015099-RA_Salv | ||||||||
Common Name | MYB93 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | MYB | ||||||||
Protein Properties | Length: 162aa MW: 19065.9 Da PI: 10.7657 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.4 | 2.2e-15 | 12 | 57 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +WT++Ede+l+++++ +G +W+t ++ g+ R++k+c+ rw kyl SMil_00015099-RA_Salv 12 AWTKQEDEKLIHYITIHGQARWSTLPKAAGLERCEKSCRQRWIKYL 57 7*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 42.1 | 2e-13 | 62 | 103 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 + +E++l+++++++lG + W++Ia +++ gRt+k++k +w+++ SMil_00015099-RA_Salv 62 FCVDEEDLIIKLHALLGDR-WSLIAGRLP-GRTEKEVKKYWNSH 103 5569*************99.*********.***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 8.5E-11 | 9 | 59 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.59E-24 | 10 | 100 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.6E-12 | 12 | 57 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.84E-8 | 12 | 57 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-16 | 12 | 57 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 10.116 | 13 | 57 | IPR017877 | Myb-like domain |
PROSITE profile | PS51294 | 19.438 | 54 | 108 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.9E-18 | 58 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-8 | 60 | 106 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.5E-12 | 64 | 103 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.39E-8 | 65 | 104 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MRRKQNYNKG CAWTKQEDEK LIHYITIHGQ ARWSTLPKAA GLERCEKSCR QRWIKYLKRE 60 NFCVDEEDLI IKLHALLGDR WSLIAGRLPG RTEKEVKKYW NSHIKRKLIR AGIDPNKHRI 120 HQKIIQTTAK SSSSVSSSST DFNLHFQTPI RPRVYSATHQ TK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-18 | 13 | 108 | 10 | 108 | B-MYB |
1h8a_C | 3e-18 | 8 | 108 | 26 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18541146, ECO:0000269|PubMed:9839469}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF059447 | 0.0 | KF059447.1 Salvia miltiorrhiza MYB-related transcription factor (MYB93) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027939617.1 | 2e-60 | transcription repressor MYB4-like | ||||
Swissprot | Q9S9K9 | 3e-52 | MYB3_ARATH; Transcription factor MYB3 | ||||
TrEMBL | A0A059PST4 | 1e-117 | A0A059PST4_SALMI; MYB-related transcription factor | ||||
STRING | XP_008797850.1 | 2e-58 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 4e-53 | myb domain protein 3 |