PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00015046-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB
Protein Properties Length: 456aa    MW: 51047.2 Da    PI: 8.0838
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00015046-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.12e-1857101348
                            SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            +WT+ Ed +l davk++ g++Wk+Ia +++ gRt+ qc +rwqk+l
  SMil_00015046-RA_Salv  57 NWTEGEDNILRDAVKKYEGKSWKKIAGCLP-GRTDVQCLHRWQKVL 101
                            8*****************************.************986 PP
2Myb_DNA-binding54.62.5e-17107153148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            +g+W++eEd +l+++v+  G + W+ Ia+ ++ gR +kqc++rw+++l
  SMil_00015046-RA_Salv 107 KGPWSKEEDGILIELVENSGEHKWSEIAEQLP-GRMGKQCRERWYNHL 153
                            79******************************.*************97 PP
3Myb_DNA-binding51.62.1e-16161201345
                            SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
        Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                            +WT eE+ +l+ a++++G++ W+  a+ ++ gRt++++k++w+
  SMil_00015046-RA_Salv 161 AWTDEEERILISAHAEYGNK-WSILAKLLP-GRTENSVKNHWN 201
                            7*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.67950101IPR017930Myb domain
SuperFamilySSF466891.72E-1553108IPR009057Homeodomain-like
SMARTSM007174.4E-1554103IPR001005SANT/Myb domain
PfamPF002492.2E-1556101IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2057112IPR009057Homeodomain-like
CDDcd001673.21E-1357101No hitNo description
PROSITE profilePS5129428.618102157IPR017930Myb domain
SuperFamilySSF466897.34E-31104200IPR009057Homeodomain-like
SMARTSM007172.2E-16106155IPR001005SANT/Myb domain
PfamPF002491.5E-16107153IPR001005SANT/Myb domain
CDDcd001677.23E-14109153No hitNo description
Gene3DG3DSA:1.10.10.602.8E-27113161IPR009057Homeodomain-like
PROSITE profilePS5129420.487158208IPR017930Myb domain
SMARTSM007174.0E-16158206IPR001005SANT/Myb domain
PfamPF002491.1E-14160201IPR001005SANT/Myb domain
CDDcd001678.24E-12161201No hitNo description
Gene3DG3DSA:1.10.10.601.3E-21162208IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
LPKNLINCGP KMEEVKCSKI EAEKEDGRNN SAAAVDDDVH GNSRKLSGPT RRSSKANWTE  60
GEDNILRDAV KKYEGKSWKK IAGCLPGRTD VQCLHRWQKV LNPDLVKGPW SKEEDGILIE  120
LVENSGEHKW SEIAEQLPGR MGKQCRERWY NHLKPEINKA AWTDEEERIL ISAHAEYGNK  180
WSILAKLLPG RTENSVKNHW NCSLKKRLCS YPACGSIANH PRLSVPPLQA NSKRVARDST  240
EANQTLSTTN LDSGSNRELC SMDFFLGNLS NLSSASGEAR NSLPSTSSKT MIMDDMSKAL  300
NHGTRKTRTR GFASLGEDDP CHQASLVCNN RDLIRPRRDN DDNLERSSEL SYTGLCYLPI  360
QWADLDIFLS TGRFPSTESY ICEQSRSRQD VKEPPCDAYS RARAILRIAA TSYRNVPSII  420
RKRAIQMLHG SVSALDNDVA VRAVESEGFE RESGDA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-60542085159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-60542085159MYB PROTO-ONCOGENE PROTEIN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094689.21e-137transcription factor MYB3R-5
TrEMBLA0A4D8XZ900.0A0A4D8XZ90_SALSN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA103932025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.11e-77Homeodomain-like protein