PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00015042-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | NF-YA | ||||||||
Protein Properties | Length: 287aa MW: 31665.3 Da PI: 8.9788 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 89.5 | 4.4e-28 | 162 | 216 | 3 | 58 |
CBFB_NFYA 3 plYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 p+YVNaKQy++I++RR +Rak+e++++ ksrkpy+h SRh hA+rR+RgsgGrF SMil_00015042-RA_Salv 162 PIYVNAKQYNAIMRRRRSRAKAESKNQD-MKSRKPYMHLSRHLHAVRRHRGSGGRF 216 9***********************8887.9*************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 3.4E-28 | 158 | 219 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 31.873 | 159 | 219 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 8.2E-21 | 162 | 184 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 2.9E-24 | 162 | 216 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 164 | 184 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 8.2E-21 | 193 | 216 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MTMHAILFKE NEGIFPDSIN GSQEIPLWSA VGAQPSPPPR RAAFHNPFLQ SKVLSLELSA 60 GKNLQLAVAD ESDEDKQVLA KEDSSHFTVX PGDCRTGENG AKTVPSLQDA SMEYEGQFKL 120 GFGQPLICAQ YPYNAEQCYG IYSTYGAQIE GSRMMLGGEG GPIYVNAKQY NAIMRRRRSR 180 AKAESKNQDM KSRKPYMHLS RHLHAVRRHR GSGGRFLSAK SEDKTKAAGK RGKQEHPESQ 240 IESDGGKKAD SGGGGSEVTS YLHHFEFDLL QPSFQPFGNM ATNYLKV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 3e-15 | 162 | 223 | 4 | 65 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012836162.1 | 2e-78 | PREDICTED: nuclear transcription factor Y subunit A-10-like | ||||
Refseq | XP_012836163.1 | 2e-78 | PREDICTED: nuclear transcription factor Y subunit A-10-like | ||||
TrEMBL | A0A4D8YVX0 | 1e-122 | A0A4D8YVX0_SALSN; Uncharacterized protein | ||||
STRING | Migut.L01823.1.p | 7e-78 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3706 | 23 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06510.2 | 4e-35 | nuclear factor Y, subunit A10 |