PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00014926-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | WOX | ||||||||
Protein Properties | Length: 210aa MW: 24063.2 Da PI: 9.9442 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 68.1 | 1.1e-21 | 80 | 139 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+ +Le l+++ r+p+a+++e+++++l +++ ++V++WFqN++a+e++ SMil_00014926-RA_Salv 80 TRWNPTQEQIGILEMLYRSgMRTPNAQQIEQITAQLgkygKIEGKNVFYWFQNHKARERQ 139 7*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 120 | 1e-38 | 80 | 141 | 4 | 65 |
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 tRW+Pt+eQi iLe+ly+sG+rtPn+++i++ita+L +yGkie+kNVfyWFQN+kaRerqkq SMil_00014926-RA_Salv 80 TRWNPTQEQIGILEMLYRSGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQ 141 8***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.608 | 75 | 140 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.42E-13 | 75 | 145 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 8.9E-8 | 77 | 144 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.3E-19 | 80 | 139 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.90E-5 | 80 | 141 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-8 | 81 | 139 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0007165 | Biological Process | signal transduction | ||||
GO:0010067 | Biological Process | procambium histogenesis | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MGIQAMKVHH LPRGLIWDHD PPSLTLGCKR FRPLAPKLST ATAATFDLKS FIKPDQCSPR 60 SSDAQKKESS QVEAAQAGGT RWNPTQEQIG ILEMLYRSGM RTPNAQQIEQ ITAQLGKYGK 120 IEGKNVFYWF QNHKARERQK QKRTSLGLSP SARTPSSIFL SSPNEEEENN RYKRKCVFDE 180 VNKYCREEEE QDRTLKLFPL HPEGRSSLRD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011069676.2 | 1e-90 | WUSCHEL-related homeobox 4 | ||||
Swissprot | Q6X7J9 | 1e-62 | WOX4_ARATH; WUSCHEL-related homeobox 4 | ||||
TrEMBL | A0A4D9AMN6 | 1e-127 | A0A4D9AMN6_SALSN; Uncharacterized protein | ||||
STRING | Migut.C00548.1.p | 6e-86 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6186 | 23 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46480.1 | 4e-65 | WUSCHEL related homeobox 4 |