PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00014719-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family RAV
Protein Properties Length: 259aa    MW: 29383.4 Da    PI: 9.249
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00014719-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP227.29.6e-091965254
                    AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                           ++kGV   + +g W A+I+       + +r++lg+f ++  Aa a++ a+ kl+
  SMil_00014719-RA_Salv 19 RFKGVVPQP-NGHWGAQIYA------NqQRIWLGTFKSETSAAIAYDSAAMKLR 65
                           589998777.8******999......44**********99***********997 PP
2B389.13.5e-28132218185
                            EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                            f k+ltpsdv+k++rlv+pk++a +h  + + e++++l ++de    W+++++y+k+s+++v+t+GW++Fvk++gL+++D+v F+  
  SMil_00014719-RA_Salv 132 FHKELTPSDVGKLNRLVIPKRYAVKHfpDVPGEQQVQLEVYDEAMSLWKFRYCYWKSSQSFVFTRGWNRFVKDKGLRSNDTVAFYTY 218
                            89*************************9555568899***********************************************943 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.1E-191980IPR001471AP2/ERF domain
CDDcd000185.40E-201976No hitNo description
Gene3DG3DSA:3.30.730.103.8E-171974IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-141975IPR016177DNA-binding domain
PROSITE profilePS5103217.1611974IPR001471AP2/ERF domain
PfamPF008472.7E-41965IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.5E-30128232IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-26130221IPR015300DNA-binding pseudobarrel domain
CDDcd100172.01E-25131216No hitNo description
PROSITE profilePS5086312.788132236IPR003340B3 DNA binding domain
PfamPF023628.3E-25132218IPR003340B3 DNA binding domain
SMARTSM010192.9E-20132226IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MEEEMVSAAR EVGGWRRERF KGVVPQPNGH WGAQIYANQQ RIWLGTFKSE TSAAIAYDSA  60
AMKLRHGDSH TNFPPTALEL GFQSQLSTEA VLNMIRDGSY PSHLSEFLRK QGELEIGLNP  120
SSLYGCSCSL LFHKELTPSD VGKLNRLVIP KRYAVKHFPD VPGEQQVQLE VYDEAMSLWK  180
FRYCYWKSSQ SFVFTRGWNR FVKDKGLRSN DTVAFYTYQT PHLGKSFLVI HHVAAQAQSS  240
PITITTPNKG FKLFGVQID
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A8e-2713121513100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011086824.11e-110AP2/ERF and B3 domain-containing transcription factor At1g50680-like
SwissprotQ9C6P58e-79RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLA0A2Z7CBN51e-112A0A2Z7CBN5_9LAMI; Uncharacterized protein
STRINGVIT_11s0037g00010.t014e-88(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52522339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.13e-81RAV family protein