PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00014656-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family LBD
Protein Properties Length: 277aa    MW: 30935.2 Da    PI: 5.8433
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00014656-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.13.1e-3837135199
                 DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                            aCaaCk++rrkCa+dC+lapyfp++++++f n+h+lFG+sn++k++++l++  +++am+++v+++eara dP  G++++i++l+qq+e
  SMil_00014656-RA_Salv  37 ACAACKYQRRKCAADCILAPYFPHDRQRQFLNAHRLFGVSNIIKIVRRLDPPAKDAAMRTIVFQSEARAADPAGGCYRIIRDLEQQIE 124
                            7*************************************************************************************** PP

                 DUF260  89 qlkaelallke 99 
                             + ael+ + +
  SMil_00014656-RA_Salv 125 LATAELEIVLH 135
                            *****998766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.04736137IPR004883Lateral organ boundaries, LOB
PfamPF031955.1E-3637132IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MQPNNIFMNS KRITAPTGPN NPSSTTHRRT ASASAQACAA CKYQRRKCAA DCILAPYFPH  60
DRQRQFLNAH RLFGVSNIIK IVRRLDPPAK DAAMRTIVFQ SEARAADPAG GCYRIIRDLE  120
QQIELATAEL EIVLHHLALC RAAAARQQDG GDANWRGNDA VVVDDGNSWS CIDGINNAHA  180
ESSSSSSFNL DHHHDQDLKI ILDNLSRDDD HHHHGYKFDC HEEILPSNNG ILTEENATFK  240
EENGQFTYIQ DENELQSAAA NFTLINSDDI ENIENKF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-22301314105LOB family transfactor Ramosa2.1
5ly0_B3e-22301314105LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011081575.11e-102LOB domain-containing protein 22-like
SwissprotQ9LRW15e-51LBD22_ARATH; LOB domain-containing protein 22
TrEMBLA0A2G9HT382e-93A0A2G9HT38_9LAMI; Uncharacterized protein
STRINGMigut.D00966.1.p2e-89(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA99262126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.15e-44LOB domain-containing protein 22
Publications ? help Back to Top
  1. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]