PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00014607-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

NF-YB

Protein Properties

Length: 178aa MW: 19467.8 Da PI: 8.2001

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00014607-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	185.5	4.1e-58	27	124	1	98
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylk 88 vreqdrflPian+srimkk lP n+ki+kdaketvqecvsefisf+tseasdkcqrekrktingddllwa+atlGfedy++plkvyl+ SMil_00014607-RA_Salv 27 VREQDRFLPIANISRIMKKGLPPNGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLN 114 69************************************************************************************ PP NF-YB 89 kyrelegekk 98 +yre+eg++k SMil_00014607-RA_Salv 115 RYREMEGDTK 124 *****975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.1E-54	22	137	IPR009072	Histone-fold
SuperFamily	SSF47113	2.95E-41	30	135	IPR009072	Histone-fold
Pfam	PF00808	5.4E-28	33	97	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.1E-20	61	79	No hit	No description
PROSITE pattern	PS00685	0	64	80	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	1.1E-20	80	98	No hit	No description
PRINTS	PR00615	1.1E-20	99	117	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MAEQGAPGSP VGGSHDSGGD QSPRSGVREQ DRFLPIANIS RIMKKGLPPN GKIAKDAKET 60 VQECVSEFIS FITSEASDKC QREKRKTING DDLLWAMATL GFEDYIDPLK VYLNRYREME 120 GDTKGSAKGT DGSTKKDGLQ QQIPNSQSTF PATSKASSPG FFFTRHELWK YSVSTLPG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	4e-47	27	118	1	92	Transcription factor HapC (Eurofung)
4g92_B	4e-47	27	118	1	92	Transcription factor HapC (Eurofung)
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011094723.1	1e-95	nuclear transcription factor Y subunit B-8
Swissprot	Q8VYK4	7e-79	NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBL	A0A0V0HS79	6e-84	A0A0V0HS79_SOLCH; Putative nuclear transcription factor Y subunit B-10-like
TrEMBL	A0A1B0T703	4e-84	A0A1B0T703_CHRMO; NF-Y protein (Fragment)
TrEMBL	A0A2U1QNJ1	4e-84	A0A2U1QNJ1_ARTAN; NF-Y protein
STRING	Migut.J00411.1.p	2e-93	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA111	24	356

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37060.3	3e-81	nuclear factor Y, subunit B8

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]