PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00014595-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | C2H2 | ||||||||
Protein Properties | Length: 163aa MW: 17729.3 Da PI: 10.0441 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.8 | 0.00075 | 43 | 65 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F++ L H +H SMil_00014595-RA_Salv 43 FTCKTCDRQFPSFQALGGHRASH 65 89**********99999998887 PP | |||||||
2 | zf-C2H2 | 14 | 0.00015 | 87 | 109 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg+ F+ L H+r+H SMil_00014595-RA_Salv 87 HECSICGQEFPLGQALGGHMRRH 109 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.63E-9 | 41 | 109 | No hit | No description |
SMART | SM00355 | 0.14 | 43 | 65 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 6.2E-12 | 43 | 67 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.556 | 43 | 70 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 45 | 65 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.0E-10 | 86 | 110 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.066 | 87 | 109 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.432 | 87 | 109 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 89 | 109 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MMKRSRDGEA DDISVMANCL MLLSTAVAGT GASDGRGDSS RIFTCKTCDR QFPSFQALGG 60 HRASHKKPRL GGGGEPLPPS PPKPKTHECS ICGQEFPLGQ ALGGHMRRHR TAMVDQSHRA 120 PPPSPPLSLF PVVKKPNNRR VFSLDLNLTP LENQYFFIAS SYV |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011091501.1 | 3e-61 | zinc finger protein ZAT12-like | ||||
TrEMBL | A0A4D8YUS1 | 3e-70 | A0A4D8YUS1_SALSN; Uncharacterized protein | ||||
STRING | XP_009593204.1 | 4e-53 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA366 | 24 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28710.1 | 7e-35 | C2H2 family protein |