PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00014572-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family GRAS
Protein Properties Length: 435aa    MW: 48756.6 Da    PI: 6.155
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00014572-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS471.44.7e-144404321374
                   GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                            l++lL++cA +v+s++le a+a+L ++s+lasp+gd+mqR+a+yf eALa r++rs++++yka+++++ +   ++ee+aa+++f+e+ 
  SMil_00014572-RA_Salv  40 LIQLLVTCAGHVASNNLESANAALDQISHLASPYGDTMQRIASYFSEALADRILRSWPGVYKAFNSTRVP--AVAEEIAARRIFFELL 125
                            689*************************************************************999888..6*************** PP

                   GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176
                            P+lk++ ++ NqaI+ea+ege++vH+iD+++ +++QW aL++ L++Rpegpp+lRiT+v++    +ke+lee+++ L++ Ae+l++pf
  SMil_00014572-RA_Salv 126 PFLKVASVISNQAIVEAMEGEKMVHVIDLNAAEPAQWRALIRDLSARPEGPPHLRITAVHH----RKEALEEMARVLTEEAENLDIPF 209
                            *************************************************************....9********************** PP

                   GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrll..........................desvsleserdevLklvkslsPkv 238
                            +fn++v+ +le+l++e+Lrvk+gEalaVn+v+qlh+ll                          ++s +++s  +++L+++++lsPkv
  SMil_00014572-RA_Salv 210 QFNPIVEVKLENLDFEKLRVKTGEALAVNSVMQLHTLLatggedargggrspsndsgssspplsASSYHSPS-MENFLSAIWGLSPKV 296
                            ****9999*****************************************************99855555555.667************ PP

                   GRAS 239 vvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkp 326
                            +vv+eq++dhn+ s +er++e+l++y+alfd++e+ lpr s er+k+Er++lg+ei+n+vacegaerrerhe+le+W++rle aGF  
  SMil_00014572-RA_Salv 297 MVVAEQDSDHNGRSMMERLSESLYFYAALFDCTESALPRGSPERMKMERMVLGEEIKNIVACEGAERRERHERLERWSRRLEVAGFVG 384
                            **************************************************************************************** PP

                   GRAS 327 vplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                            +pls++a  qak+ll+ +k +gy+++ee+gs+v++W+drpL+svSaWr
  SMil_00014572-RA_Salv 385 APLSYYALLQAKRLLQSYKCEGYKIKEENGSVVICWQDRPLYSVSAWR 432
                            ***********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.46214412IPR005202Transcription factor GRAS
PfamPF035141.6E-14140432IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MFQEDGSSSV TSSPLQMFPM MTSPHPWLKE LKPEERGLCL IQLLVTCAGH VASNNLESAN  60
AALDQISHLA SPYGDTMQRI ASYFSEALAD RILRSWPGVY KAFNSTRVPA VAEEIAARRI  120
FFELLPFLKV ASVISNQAIV EAMEGEKMVH VIDLNAAEPA QWRALIRDLS ARPEGPPHLR  180
ITAVHHRKEA LEEMARVLTE EAENLDIPFQ FNPIVEVKLE NLDFEKLRVK TGEALAVNSV  240
MQLHTLLATG GEDARGGGRS PSNDSGSSSP PLSASSYHSP SMENFLSAIW GLSPKVMVVA  300
EQDSDHNGRS MMERLSESLY FYAALFDCTE SALPRGSPER MKMERMVLGE EIKNIVACEG  360
AERRERHERL ERWSRRLEVA GFVGAPLSYY ALLQAKRLLQ SYKCEGYKIK EENGSVVICW  420
QDRPLYSVSA WRFRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A5e-75244342380Protein SCARECROW
5b3h_D5e-75244342380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090154.10.0scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A2G9HIR50.0A0A2G9HIR5_9LAMI; Uncharacterized protein
STRINGMigut.D00643.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29142453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-172scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]