PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00014482-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB
Protein Properties Length: 261aa    MW: 29660.4 Da    PI: 5.4316
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00014482-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.74.9e-174188148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g WT+eEd++l++ ++q G ++W++ ++  g+ R++k+c++rw +yl
  SMil_00014482-RA_Salv 41 KGLWTAEEDQILINFITQNGHPNWRALPKQAGLLRCGKSCRLRWMNYL 88
                           678*****************************99************97 PP
2Myb_DNA-binding49.11.3e-1594139148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            rg++T++E++ ++++++qlG++ W+ Ia+++  gRt++++k+ w++yl
  SMil_00014482-RA_Salv  94 RGNFTKQEEDSIIQLHAQLGNK-WSVIASRLS-GRTDNEIKNVWHTYL 139
                            89********************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.5E-233291IPR009057Homeodomain-like
PROSITE profilePS5129415.3033688IPR017930Myb domain
SuperFamilySSF466893.45E-2838135IPR009057Homeodomain-like
SMARTSM007173.9E-124090IPR001005SANT/Myb domain
PfamPF002498.6E-144188IPR001005SANT/Myb domain
CDDcd001672.82E-94488No hitNo description
PROSITE profilePS5129423.12189143IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-2492143IPR009057Homeodomain-like
SMARTSM007171.9E-1293141IPR001005SANT/Myb domain
PfamPF002493.5E-1494139IPR001005SANT/Myb domain
CDDcd001672.35E-896139No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MASPEGVGGW VSEWRKGLGG ASLNLGDGVR APCCDKTGLK KGLWTAEEDQ ILINFITQNG  60
HPNWRALPKQ AGLLRCGKSC RLRWMNYLRP DIRRGNFTKQ EEDSIIQLHA QLGNKWSVIA  120
SRLSGRTDNE IKNVWHTYLK KRVARKYQPQ PQIKTGEVEY SSNQYCQQVE LSMPGESLSE  180
VSSAIISDDA LMSNLLYKWP EMGESFWLEV FPVEEWSDIS DFSSGNNHPD QLRFADSELN  240
MEDCSVWSNV FNKANELTEL I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-23391432105MYB PROTO-ONCOGENE PROTEIN
1mse_C6e-23391432105C-Myb DNA-Binding Domain
1msf_C6e-23391432105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in cold-regulation of CBF genes and in the development of freezing tolerance. May be part of a complex network of transcription factors controlling the expression of CBF genes and other genes in response to cold stress. Binds to the MYB recognition sequences in the promoters of CBF1, CBF2 and CBF3 genes (PubMed:17015446). Involved in drought and salt tolerance. May enhance expression levels of genes involved in abscisic acid (ABA) biosynthesis and signaling, as well as those encoding stress-protective proteins (PubMed:19161942). {ECO:0000269|PubMed:17015446, ECO:0000269|PubMed:19161942}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) and drought stress (PubMed:19161942). Induced by salt stress (PubMed:19161942). {ECO:0000269|PubMed:19161942}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0594230.0KF059423.1 Salvia miltiorrhiza MYB-related transcription factor (MYB69) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080041.18e-79transcription factor MYB14
SwissprotQ9LTC46e-66MYB15_ARATH; Transcription factor MYB15
TrEMBLA0A059PRF11e-173A0A059PRF1_SALMI; MYB-related transcription factor
STRINGPOPTR_0005s24550.14e-75(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.12e-68myb domain protein 15
Publications ? help Back to Top
  1. Schnaubelt D, et al.
    Low glutathione regulates gene expression and the redox potentials of the nucleus and cytosol in Arabidopsis thaliana.
    Plant Cell Environ., 2015. 38(2): p. 266-79
    [PMID:24329757]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ma X, et al.
    CYCLIN-DEPENDENT KINASE G2 regulates salinity stress response and salt mediated flowering in Arabidopsis thaliana.
    Plant Mol. Biol., 2015. 88(3): p. 287-99
    [PMID:25948280]
  4. Kim SH, et al.
    Phosphorylation of the transcriptional repressor MYB15 by mitogen-activated protein kinase 6 is required for freezing tolerance in Arabidopsis.
    Nucleic Acids Res., 2017. 45(11): p. 6613-6627
    [PMID:28510716]
  5. Chezem WR,Memon A,Li FS,Weng JK,Clay NK
    SG2-Type R2R3-MYB Transcription Factor MYB15 Controls Defense-Induced Lignification and Basal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(8): p. 1907-1926
    [PMID:28733420]
  6. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]