PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00014469-RA_Salv
Common NameMYB43
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB
Protein Properties Length: 271aa    MW: 30313.3 Da    PI: 4.9235
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00014469-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.92.7e-141461148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+WT++Ed++l++ +   G  +W++ ++  g+ R++k+c++rw +yl
  SMil_00014469-RA_Salv 14 KGPWTADEDKKLINFILTNGQCCWRALPKLAGLLRCGKSCRLRWTNYL 61
                           79******************************99************97 PP
2Myb_DNA-binding52.79.7e-1773111747
                            HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             E++l +d+++qlG++ W++Ia++++ gRt++++k++w+++
  SMil_00014469-RA_Salv  73 CEEKLVIDLHAQLGNR-WSKIASHLP-GRTDNEIKNHWNTH 111
                            59**************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-19562IPR009057Homeodomain-like
PROSITE profilePS5129412.05961IPR017930Myb domain
SuperFamilySSF466895.62E-2611108IPR009057Homeodomain-like
SMARTSM007173.9E-111363IPR001005SANT/Myb domain
PfamPF002494.2E-131461IPR001005SANT/Myb domain
CDDcd001671.52E-81661No hitNo description
PROSITE profilePS5129425.4962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-2463117IPR009057Homeodomain-like
SMARTSM007175.3E-1466114IPR001005SANT/Myb domain
PfamPF002492.1E-1472111IPR001005SANT/Myb domain
CDDcd001676.75E-1274112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MGRQPCCDKV GLKKGPWTAD EDKKLINFIL TNGQCCWRAL PKLAGLLRCG KSCRLRWTNY  60
LRPDLKRGLL SACEEKLVID LHAQLGNRWS KIASHLPGRT DNEIKNHWNT HIKKKLKKMG  120
IDPVTHQPLP PPTAVDELGA TESTTTFEQS TISTDESNDD KIMSPFESSD VLLVNSSDFC  180
IDEIPVMEPH EILLPPSDHH SPSCSSSSSS SNAAQSFQDY CSEILNTNIW DQEFGDVFDL  240
LGDFNGKAAL DFESSLPMII GDEDCWKFDV M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0593970.0KF059397.1 Salvia miltiorrhiza MYB-related transcription factor (MYB43) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022844265.11e-104transcription factor MYB20-like
SwissprotQ9C7U74e-90MYB20_ARATH; Transcription factor MYB20
TrEMBLA0A059PSN00.0A0A059PSN0_SALMI; MYB-related transcription factor
STRINGcassava4.1_012707m7e-99(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16600.14e-94myb domain protein 43
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li C,Lu S
    Genome-wide characterization and comparative analysis of R2R3-MYB transcription factors shows the complexity of MYB-associated regulatory networks in Salvia miltiorrhiza.
    BMC Genomics, 2014. 15: p. 277
    [PMID:24725266]