PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00014399-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 327aa    MW: 34811.1 Da    PI: 6.2424
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00014399-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.73.3e-16105151455
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             hn  E+rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  SMil_00014399-RA_Salv 105 VHNLSEKRRRSRINEKLKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 151
                            6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.34E-1895155No hitNo description
SuperFamilySSF474591.23E-1998159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-1898156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.898101150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.2E-14105151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-17107156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MSDLYGSNES EDMSSFLQIL LQNSSSSAAT SDSAAAAGCL FGGGGAVAES STSISFSDPS  60
CFFARESGGV RGKNLASTCE GGDACDVPVN PVPPRSSKRS RAAEVHNLSE KRRRSRINEK  120
LKALQNLIPN SNKTDKASML DEAIEYLKQL QLQVQVIISL SPSTPAFSIS KSHATRLFSL  180
QLSRYILDAI TFLMLLVYAN VDNEKGLSLH PGYSLGSLQS MLAPSGGLDI DEGDPLLHAN  240
RGLSRDQDVF MQSSIAPTSH GPSTLPTLMP NTTSASMLPS YAPPLQNRYG LLNHMASTKD  300
ICRDDTLSRL QLDISCSGNN SSPGVSS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2575030.0KP257503.1 Salvia miltiorrhiza clone 70 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011074391.21e-101transcription factor ALC-like
TrEMBLA0A0H3Y8W40.0A0A0H3Y8W4_SALMI; Basic helix-loop-helix transcription factor
STRINGMigut.C00561.1.p7e-97(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75432328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.15e-22bHLH family protein