PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00014391-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

Protein Properties

Length: 918aa MW: 101127 Da PI: 6.9628

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00014391-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	57.8	2e-18	343	443	1	99
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+kvl+ sd+++ grlvlpk +ae++ ++++e+ l+++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++ SMil_00014391-RA_Salv 343 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSR 429 99************************555567778***********99899999999.*******************8 PP -SSSEE..EEEEE-S CS B3 85 dgrsefelvvkvfrk 99 ++ e++l+++++++ SMil_00014391-RA_Salv 430 MD-PEGKLLMGFRKA 443 76.888888888765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.1E-29	335	444	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.49E-19	340	442	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.20E-22	341	442	No hit	No description
Pfam	PF02362	6.9E-16	343	443	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.152	343	444	IPR003340	B3 DNA binding domain
SMART	SM01019	1.9E-20	343	444	IPR003340	B3 DNA binding domain
PROSITE profile	PS51050	13.876	606	656	IPR011124	Zinc finger, CW-type
Pfam	PF07496	3.7E-9	611	653	IPR011124	Zinc finger, CW-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010030	Biological Process	positive regulation of seed germination
GO:2000034	Biological Process	regulation of seed maturation
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 918 aa Download sequence Send to blast
LFVASTKSSS KAAIYRPIKT QIARAKRNTF LTENLCLEME GGVCMNGICG SSSSVEWKKG 60 WPLRSGGFAT LCHNCGTAYK DLVFCETFHS EETGWRECTS CGKRLHCGCI ASSTLLELLD 120 TGGVNCTGCS KSCPRPYTPL EEKHKACGLS TENGTDRNSE RIVPAQSGDD AKMDCQENLL 180 PSPNANVTSR KLEDELASPE GIGYKLLSSS NQSPVGPSKN YDMFQESKSL HKSLVETNLS 240 ISLSASSNSN TLSGVMAEER QLNTAISSFQ QGCRPRHLLP RVPTILAAGL ETNSSSISQL 300 RVARPPVEGR VKSQLLPRYW PRITDQELQQ ISGDSNSTIV PLFEKVLSAS DAGRIGRLVL 360 PKACAEAYFP PISQPEGLPL RIQDVKGKEW VFQFRFWPNN NSRMYVLEGV TPCIQSMQLQ 420 AGDTVTFSRM DPEGKLLMGF RKASNSVLVQ KQDSHYPMDM SAFQGDGLIG NAESLPLISG 480 YSGLLQSLKG SGSPSMTLFP KHVYPSNISP QIIERNVCKS GGDNLLPQSL VPSERKRRNI 540 GAKSKRLLID GHDSLELRLS WEEVQDLLRP PPTAKPSTVS VEDHEIEEFD EPPVFGKRSI 600 FIVRHSGEQE QWTQCDSCLK WRKLPIDLLL PLRWTCQDNI NDQMRCSCSA PDEMDSRELE 660 NLLRMHKDFT KRRALSIPKP VHGQESQENV EALTNGAGNT SEPGSSSVAT TTRHPRHRPG 720 CSCIVCIQPP SGKGKHKPTC TCNVCMTVKR RFKTLMMRKK KRQSEREAEI AQRNQFAKEE 780 AEVDSVAPPQ HVQLDNNAKR SESENLLKCQ SDGGPSQENA ENFNGGLDLN CCPAPSSHIS 840 MMNLLQEASL PLETYLRQNG LTSLVVSEQQ ESSTPVIAQA SGETTTQARD DAGCSTAAQE 900 HEGSNDLSEK EQREDDTS

Sequence ? help Back to Top

Protein Sequence Length: 918 aa Download sequence Send to blast

LFVASTKSSS KAAIYRPIKT QIARAKRNTF LTENLCLEME GGVCMNGICG SSSSVEWKKG  60
WPLRSGGFAT LCHNCGTAYK DLVFCETFHS EETGWRECTS CGKRLHCGCI ASSTLLELLD  120
TGGVNCTGCS KSCPRPYTPL EEKHKACGLS TENGTDRNSE RIVPAQSGDD AKMDCQENLL  180
PSPNANVTSR KLEDELASPE GIGYKLLSSS NQSPVGPSKN YDMFQESKSL HKSLVETNLS  240
ISLSASSNSN TLSGVMAEER QLNTAISSFQ QGCRPRHLLP RVPTILAAGL ETNSSSISQL  300
RVARPPVEGR VKSQLLPRYW PRITDQELQQ ISGDSNSTIV PLFEKVLSAS DAGRIGRLVL  360
PKACAEAYFP PISQPEGLPL RIQDVKGKEW VFQFRFWPNN NSRMYVLEGV TPCIQSMQLQ  420
AGDTVTFSRM DPEGKLLMGF RKASNSVLVQ KQDSHYPMDM SAFQGDGLIG NAESLPLISG  480
YSGLLQSLKG SGSPSMTLFP KHVYPSNISP QIIERNVCKS GGDNLLPQSL VPSERKRRNI  540
GAKSKRLLID GHDSLELRLS WEEVQDLLRP PPTAKPSTVS VEDHEIEEFD EPPVFGKRSI  600
FIVRHSGEQE QWTQCDSCLK WRKLPIDLLL PLRWTCQDNI NDQMRCSCSA PDEMDSRELE  660
NLLRMHKDFT KRRALSIPKP VHGQESQENV EALTNGAGNT SEPGSSSVAT TTRHPRHRPG  720
CSCIVCIQPP SGKGKHKPTC TCNVCMTVKR RFKTLMMRKK KRQSEREAEI AQRNQFAKEE  780
AEVDSVAPPQ HVQLDNNAKR SESENLLKCQ SDGGPSQENA ENFNGGLDLN CCPAPSSHIS  840
MMNLLQEASL PLETYLRQNG LTSLVVSEQQ ESSTPVIAQA SGETTTQARD DAGCSTAAQE  900
HEGSNDLSEK EQREDDTS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9a_A	6e-69	321	446	2	127	B3 domain-containing transcription repressor VAL1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	748	759	KRRFKTLMMRKK
2	748	761	KRRFKTLMMRKKKR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011095138.1	0.0	B3 domain-containing transcription repressor VAL2 isoform X1
Refseq	XP_020553390.1	0.0	B3 domain-containing transcription repressor VAL2 isoform X1
Refseq	XP_020553391.1	0.0	B3 domain-containing transcription repressor VAL2 isoform X1
Swissprot	Q6Z3U3	0.0	Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBL	A0A4D8Z0Q2	0.0	A0A4D8Z0Q2_SALSN; Uncharacterized protein
STRING	Migut.J00040.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1491	23	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	0.0	HSI2-like 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]