PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00014379-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family GRAS
Protein Properties Length: 563aa    MW: 61920 Da    PI: 7.0902
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00014379-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS351.31.5e-1071965632374
                   GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                            ++ L+++A a+s+g+l  a+ +++rl++ asp+g++ qRl+a+++ AL++r++        + +p +tse   +++  ++++++evsP
  SMil_00014379-RA_Salv 196 KQSLMDAAAAISEGNLPTATDIITRLQQVASPRGSSEQRLTAFMVSALKSRVNP-------TERPHSTSELYAKDHKLSTQMLYEVSP 276
                            588**************************************************9.......3344444445589999999******** PP

                   GRAS  90 ilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAeel 172
                            ++k+++++aN aIl+a++++  +r+H++Df+i++G+Q++ +l+aLa+ +   + ++ l+iT++++   gs e+ + +gerL+ +A+++
  SMil_00014379-RA_Salv 277 CFKLCFMAANLAILDATSEQgfQRIHVVDFEIGEGGQYMHFLHALAATQsggKRAAALKITAFAD---GSDEKHKIVGERLNTLADKI 361
                            *****************99988************************7664544477*********...88999*************** PP

                   GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflea 260
                            gv+f+f+v     + dl+ ++L v+++EalaVnl+++l++l+desv++e+ rde+L++vk +sPkv++vveqe++ n++++  r+ ea
  SMil_00014379-RA_Salv 362 GVRFDFSV-KKLMVGDLSRDKLGVEEDEALAVNLAFKLQNLPDESVTTENMRDELLRVVKAMSPKVMTVVEQEMNGNTAPLTVRVREA 448
                            *******9.7889*************************************************************************** PP

                   GRAS 261 leyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..s 346
                            +e+y al+dslea+++r + +r+ +E++ +gr+i n vaceg+er+er+e ++kWr+r+++aGF++ p+s+++ ++ ++ l+     +
  SMil_00014379-RA_Salv 449 CEHYGALLDSLEATVSRSNPDRVRIEEA-VGRKIGNSVACEGRERVERCEVFGKWRARMSMAGFQAEPMSQHVLDSLRAKLNSGTrgN 535
                            ****************************.***********************************************999998755468 PP

                   GRAS 347 dgyrveeesgslvlgWkdrpLvsvSaWr 374
                             g++v e+sg +++gW++r+L+++SaWr
  SMil_00014379-RA_Salv 536 PGFTVTEQSGGICFGWMGRTLTVASAWR 563
                            99*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098548.017169541IPR005202Transcription factor GRAS
PfamPF035145.2E-105196563IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MSSGFPGGGR DFFTGGGGSY STNQQQQFPF RSPLSRILPD PASQIRRPDL IRKRSLAEFQ  60
QQNQQGLELY LRNVKMRHVS PISPVDFPTI LPDVSNSRYA QHRLQPLSIS NRNTIFSGVN  120
LPGQDTQTKM MNYRLQELEK ELLGDEDDGD EVSVVTHSEW SETIQNLIAP TISPSPTSSS  180
SSCSSTSASP PIPSTKQSLM DAAAAISEGN LPTATDIITR LQQVASPRGS SEQRLTAFMV  240
SALKSRVNPT ERPHSTSELY AKDHKLSTQM LYEVSPCFKL CFMAANLAIL DATSEQGFQR  300
IHVVDFEIGE GGQYMHFLHA LAATQSGGKR AAALKITAFA DGSDEKHKIV GERLNTLADK  360
IGVRFDFSVK KLMVGDLSRD KLGVEEDEAL AVNLAFKLQN LPDESVTTEN MRDELLRVVK  420
AMSPKVMTVV EQEMNGNTAP LTVRVREACE HYGALLDSLE ATVSRSNPDR VRIEEAVGRK  480
IGNSVACEGR ERVERCEVFG KWRARMSMAG FQAEPMSQHV LDSLRAKLNS GTRGNPGFTV  540
TEQSGGICFG WMGRTLTVAS AWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A9e-3520356227378Protein SCARECROW
5b3h_A8e-3520356226377Protein SCARECROW
5b3h_D8e-3520356226377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012858763.10.0PREDICTED: scarecrow-like protein 8
SwissprotQ9FYR71e-139SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A4D8Y3G80.0A0A4D8Y3G8_SALSN; Uncharacterized protein
STRINGMigut.F01094.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40232443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-125SCARECROW-like 8