PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00014217-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

FAR1

Protein Properties

Length: 688aa MW: 77899.2 Da PI: 7.5907

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00014217-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	89.6	4.2e-28	93	180	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fY+eYAk++GF++++++s++sk+++e+++++f Cs++g + e+++ +r+ ++++t+Cka+++vkk++dgkw+++++++eHnHe SMil_00014217-RA_Salv 93 SFYQEYAKSMGFTTSIKNSRRSKKTKEFIDAKFACSRYGVTPESESG---VSRRPSVKKTDCKASMHVKKKRDGKWYIHEFVKEHNHE 177 5**************************************999887...77778899**************************** PP FAR1 89 lap 91 l p SMil_00014217-RA_Salv 178 LLP 180 975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.6E-25	93	180	IPR004330	FAR1 DNA binding domain
Pfam	PF04434	7.9E-8	417	450	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.027	417	453	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.2E-8	428	455	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 688 aa Download sequence Send to blast
MLNLNHRLIV VLKFNQHWKQ LFRETIDAMV DFEDNVGGGE QSLALNVVDI VDVSKSREGQ 60 VSSSSRRDVV GIEGDSFEPH DGIEFDSHEA AYSFYQEYAK SMGFTTSIKN SRRSKKTKEF 120 IDAKFACSRY GVTPESESGV SRRPSVKKTD CKASMHVKKK RDGKWYIHEF VKEHNHELLP 180 ALAYHFRIHR NVKLAEKSNI DILYAIPDRG IGRSRMPSQE GKEYGGSATF RVDDCEKMRI 240 LWLHGMKESQ SIPSQYILKR WMKDAKGKQL LVEGTERIQN RIQRYNDLCK RAIGLGEEGS 300 LSEENYNIAC RALVEALKSC VHINNENPVE CSSNTAGLRF TEEEDLLLPP AKTIKKKNAN 360 KKRKTQPEPE AVAIDTQDSL HQMIEVLGVV GCHPKKEKEY GGSTTFRVDD CEKNENFVVT 420 WNEGKSEVSC SCLMFEYKGF LCRHAMIVLQ ICGLSSIPSQ YILKRWMKDA KGKQLLVEGT 480 ERIQNRIQRY NDLCKRAIGL GEEGSLSEEN YNIACRALVE ALKSCVHINN ENPVECSSNT 540 AGLRFTEEED LLLPPAKTIK KKNANKKRKT QPEPEAVAID TQDSLHQMEH LSSEEIPVNG 600 YYGSQQHVHG LLNLMEPPND GFYVGHQTMQ GLGQLHSLAS SHDSFYGAHQ QSMPALGHLD 660 FRQPTFTYGM QDDQSVRPAQ LHGTARHA

Sequence ? help Back to Top

Protein Sequence Length: 688 aa Download sequence Send to blast

MLNLNHRLIV VLKFNQHWKQ LFRETIDAMV DFEDNVGGGE QSLALNVVDI VDVSKSREGQ  60
VSSSSRRDVV GIEGDSFEPH DGIEFDSHEA AYSFYQEYAK SMGFTTSIKN SRRSKKTKEF  120
IDAKFACSRY GVTPESESGV SRRPSVKKTD CKASMHVKKK RDGKWYIHEF VKEHNHELLP  180
ALAYHFRIHR NVKLAEKSNI DILYAIPDRG IGRSRMPSQE GKEYGGSATF RVDDCEKMRI  240
LWLHGMKESQ SIPSQYILKR WMKDAKGKQL LVEGTERIQN RIQRYNDLCK RAIGLGEEGS  300
LSEENYNIAC RALVEALKSC VHINNENPVE CSSNTAGLRF TEEEDLLLPP AKTIKKKNAN  360
KKRKTQPEPE AVAIDTQDSL HQMIEVLGVV GCHPKKEKEY GGSTTFRVDD CEKNENFVVT  420
WNEGKSEVSC SCLMFEYKGF LCRHAMIVLQ ICGLSSIPSQ YILKRWMKDA KGKQLLVEGT  480
ERIQNRIQRY NDLCKRAIGL GEEGSLSEEN YNIACRALVE ALKSCVHINN ENPVECSSNT  540
AGLRFTEEED LLLPPAKTIK KKNANKKRKT QPEPEAVAID TQDSLHQMEH LSSEEIPVNG  600
YYGSQQHVHG LLNLMEPPND GFYVGHQTMQ GLGQLHSLAS SHDSFYGAHQ QSMPALGHLD  660
FRQPTFTYGM QDDQSVRPAQ LHGTARHA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:12753585, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:22634759}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269\|PubMed:18033885}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011085456.1	1e-162	protein FAR-RED IMPAIRED RESPONSE 1
Refseq	XP_011085457.1	1e-162	protein FAR-RED IMPAIRED RESPONSE 1
Swissprot	Q9SWG3	1e-102	FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1
TrEMBL	A0A4D8XTI8	0.0	A0A4D8XTI8_SALSN; Uncharacterized protein
STRING	Migut.H01263.1.p	1e-159	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA496	21	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	6e-92	FAR1 family protein

Publications ? help Back to Top
Domergue F, et al. Three Arabidopsis fatty acyl-coenzyme A reductases, FAR1, FAR4, and FAR5, generate primary fatty alcohols associated with suberin deposition. Plant Physiol., 2010. 153(4): p. 1539-54 [PMID:20571114] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Wang C, et al. SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes. J Genet Genomics, 2015. 42(4): p. 161-8 [PMID:25953354] Wang W, et al. A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis. J Integr Plant Biol, 2016. 58(1): p. 91-103 [PMID:25989254] Ma L, et al. Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Mol Plant, 2016. 9(4): p. 541-57 [PMID:26714049] Siddiqui H,Khan S,Rhodes BM,Devlin PF FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. Front Plant Sci, 2016. 7: p. 175 [PMID:26941752] Liu L,Li B,Liu X FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis. Plant Signal Behav, 2016. 11(10): p. e1238545 [PMID:27660915] Ma L,Xue N,Fu X,Zhang H,Li G Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar. New Phytol., 2017. 213(4): p. 1682-1696 [PMID:27859295] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]