PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00014063-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family LBD
Protein Properties Length: 233aa    MW: 25666.1 Da    PI: 8.7374
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00014063-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26046.69.5e-15262156
                 DUF260  1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeered 56
                           +C++C+vlr++C++ C+l+p++      ++q +++ +v+k+FG++ ++++++a+pe++r+ 
  SMil_00014063-RA_Salv  2 SCNGCRVLRKGCSETCILRPCLqwiesTEAQGHATVFVAKFFGRAGLMSFISAVPETQRPG 62
                           6*********************9998777889**************************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508919.8251107IPR004883Lateral organ boundaries, LOB
PfamPF031958.0E-12262IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSETCILR PCLQWIESTE AQGHATVFVA KFFGRAGLMS FISAVPETQR  60
PGNYHSSFCL HLTKEEFDFL SFGLWRSSLS VVAVRSSRED RQSGQWGGGP SGHRQLARLP  120
GGRRDRAPRR RLEADSELLG GESAPDDASD CTDMFRLQHH ACPSSKRRRL PDEPPKVMQL  180
ADLDLSLTPG KKGGALPEKR RLGSPSMNSE GSVTTTCTGD CRANELKLLN LFN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165169KRRRL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011097231.19e-76LOB domain-containing protein 37-like
TrEMBLA0A2G9HIR71e-75A0A2G9HIR7_9LAMI; Uncharacterized protein
STRINGXP_009626676.16e-62(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9662490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.12e-37LOB domain-containing protein 38