PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00014063-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | LBD | ||||||||
Protein Properties | Length: 233aa MW: 25666.1 Da PI: 8.7374 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 46.6 | 9.5e-15 | 2 | 62 | 1 | 56 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeered 56 +C++C+vlr++C++ C+l+p++ ++q +++ +v+k+FG++ ++++++a+pe++r+ SMil_00014063-RA_Salv 2 SCNGCRVLRKGCSETCILRPCLqwiesTEAQGHATVFVAKFFGRAGLMSFISAVPETQRPG 62 6*********************9998777889**************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 9.825 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.0E-12 | 2 | 62 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MSCNGCRVLR KGCSETCILR PCLQWIESTE AQGHATVFVA KFFGRAGLMS FISAVPETQR 60 PGNYHSSFCL HLTKEEFDFL SFGLWRSSLS VVAVRSSRED RQSGQWGGGP SGHRQLARLP 120 GGRRDRAPRR RLEADSELLG GESAPDDASD CTDMFRLQHH ACPSSKRRRL PDEPPKVMQL 180 ADLDLSLTPG KKGGALPEKR RLGSPSMNSE GSVTTTCTGD CRANELKLLN LFN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 165 | 169 | KRRRL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011097231.1 | 9e-76 | LOB domain-containing protein 37-like | ||||
TrEMBL | A0A2G9HIR7 | 1e-75 | A0A2G9HIR7_9LAMI; Uncharacterized protein | ||||
STRING | XP_009626676.1 | 6e-62 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA966 | 24 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 2e-37 | LOB domain-containing protein 38 |