PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00013932-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

GRAS

Protein Properties

Length: 623aa MW: 70517.7 Da PI: 6.5893

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00013932-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	370.9	1.7e-113	249	619	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 l++lL++cA+av++ d + ++ lLa++++++sp gd ++Rla+yf++AL+ar+a+++s y+a++ + ++ + l ++++ ++ SMil_00013932-RA_Salv 249 LRSLLMQCAQAVATFDSRTVNDLLAKIRQHSSPMGDGTERLAHYFAKALEARVAGTGSAAYAAFSNRIST----AVILRGYQTYITAC 332 689**************************************************999999999998886....89999***** PP GRAS 89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgv 174 P+ k+s+++aN++I + +++++++HiiDf+i +G+QWp+L+qaL++Rp gpp+lRiTg++ p++g +e++ tg+rLa++++++gv SMil_00013932-RA_Salv 333 PFKKMSNVLANKTIKKLAHSATTLHIIDFGILYGFQWPCLIQALSERPMGPPKLRITGIDFPQPGfrPAERVADTGDRLARYCQRFGV 420 ************************************************************9******************* PP GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262 pfe+n+ +a+++e++++eeL+++++E ++Vn+ ++l++++de+v ++s+rd+vLkl+k+++P+++++ + +n++ F++rf eal SMil_00013932-RA_Salv 421 PFEYNA-IAQKWETIKVEELKIDKDELVVVNSLYRLQNVPDETVVVNSPRDAVLKLIKKINPDMFIHGVVNGTYNTPFFVTRFREALF 507 **.7**************************************************************************** PP GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyr 350 ys+lfd++ea++pre+ +r E+e++g+++ n++aceg+er r et+++W++r +aGF+++pl+++++ +k ++ + + ++ SMil_00013932-RA_Salv 508 QYSSLFDMYEATVPREDPNRLLFEEEVFGKDAINIIACEGTERLDRPETYKQWQARNVRAGFRQLPLDQQIVRYVKNKVKAEYHQDFS 595 ****************************************************************************999888 PP GRAS 351 veeesgslvlgWkdrpLvsvSaWr 374 v+e+ +++++gWk+r L ++S+W+ SMil_00013932-RA_Salv 596 VDEDGKWMLQGWKGRVLHAFSCWK 619 ***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	63.888	223	599	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.9E-111	249	619	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 623 aa Download sequence Send to blast
MNTLVQGYMS PANDFQLNCR SRSVFPEENR VLGRNQNLIN GDEYPSEGEV SVTSQDEGSC 60 SSPEGELSKE MDHSDAILKF IGIMLMEEED LENKPCMLHD CLALQATEKS LYDVLNNNNS 120 DKTDSSSDIT SFLESSWSDN MRDFESGSEI QYQSTPPPRE KKHRYRDGGG DDYRSNKQLA 180 NNVVGGESEP LDIFDKVLLC SNSDADLMSD CRKPDGNEAK KKWPQRKGSG RGRPRGGKKQ 240 GVIKEVVDLR SLLMQCAQAV ATFDSRTVND LLAKIRQHSS PMGDGTERLA HYFAKALEAR 300 VAGTGSAAYA AFSNRISTAV ILRGYQTYIT ACPFKKMSNV LANKTIKKLA HSATTLHIID 360 FGILYGFQWP CLIQALSERP MGPPKLRITG IDFPQPGFRP AERVADTGDR LARYCQRFGV 420 PFEYNAIAQK WETIKVEELK IDKDELVVVN SLYRLQNVPD ETVVVNSPRD AVLKLIKKIN 480 PDMFIHGVVN GTYNTPFFVT RFREALFQYS SLFDMYEATV PREDPNRLLF EEEVFGKDAI 540 NIIACEGTER LDRPETYKQW QARNVRAGFR QLPLDQQIVR YVKNKVKAEY HQDFSVDEDG 600 KWMLQGWKGR VLHAFSCWKP AHN

Sequence ? help Back to Top

Protein Sequence Length: 623 aa Download sequence Send to blast

MNTLVQGYMS PANDFQLNCR SRSVFPEENR VLGRNQNLIN GDEYPSEGEV SVTSQDEGSC  60
SSPEGELSKE MDHSDAILKF IGIMLMEEED LENKPCMLHD CLALQATEKS LYDVLNNNNS  120
DKTDSSSDIT SFLESSWSDN MRDFESGSEI QYQSTPPPRE KKHRYRDGGG DDYRSNKQLA  180
NNVVGGESEP LDIFDKVLLC SNSDADLMSD CRKPDGNEAK KKWPQRKGSG RGRPRGGKKQ  240
GVIKEVVDLR SLLMQCAQAV ATFDSRTVND LLAKIRQHSS PMGDGTERLA HYFAKALEAR  300
VAGTGSAAYA AFSNRISTAV ILRGYQTYIT ACPFKKMSNV LANKTIKKLA HSATTLHIID  360
FGILYGFQWP CLIQALSERP MGPPKLRITG IDFPQPGFRP AERVADTGDR LARYCQRFGV  420
PFEYNAIAQK WETIKVEELK IDKDELVVVN SLYRLQNVPD ETVVVNSPRD AVLKLIKKIN  480
PDMFIHGVVN GTYNTPFFVT RFREALFQYS SLFDMYEATV PREDPNRLLF EEEVFGKDAI  540
NIIACEGTER LDRPETYKQW QARNVRAGFR QLPLDQQIVR YVKNKVKAEY HQDFSVDEDG  600
KWMLQGWKGR VLHAFSCWKP AHN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	3e-50	253	619	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012827861.1	0.0	PREDICTED: scarecrow-like protein 14
Swissprot	Q9XE58	1e-180	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A4D9AM19	0.0	A0A4D9AM19_SALSN; Uncharacterized protein
STRING	Migut.D02076.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-180	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]