PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00013931-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

GRAS

Protein Properties

Length: 634aa MW: 71762.6 Da PI: 6.3393

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00013931-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	367.2	2.3e-112	260	631	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 l++lL++cAeavs+ ++++aq+lL+++++++sp+gdp++Rla++f++AL+ar+++++s ly a ++++ + ++ l+++++++ ++ SMil_00013931-RA_Salv 260 LRTLLTRCAEAVSTFNAAAAQTLLKQIRNHSSPYGDPNERLAHCFANALEARMSGTGSALYTASAARSIP---AAQLLKSYQTYVTAC 344 5789*************************************************999999888888887...99********* PP GRAS 89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgv 174 P+ ++s++ aN+ I ++ +++++HiiDf+i +G+QWp++++ L+ +p+gpp+l+iTg++ p++g +e++e+tg+rL + +++++v SMil_00013931-RA_Salv 345 PFKRMSNIFANKSIGKSSREATKLHIIDFGILYGFQWPCIIHGLSLKPGGPPTLKITGIDYPQPGfkPAERVEQTGRRLVECCKRFNV 432 ************************************************************999***************** PP GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262 pfe+++ +akr++d+ le+L+++++E+++Vn+ ++l ++ des ++s+rd+vLkl+k+++P+v+v+ + ++n++ F +rf eal SMil_00013931-RA_Salv 433 PFEYKA-IAKRWDDVALEDLEIERDEMVVVNCLYRLRHTADESDGVNSQRDAVLKLIKRINPQVLVHGVVNGSYNASYFPTRFKEALF 519 **.7**************************************************************************** PP GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyr 350 +ys+ fd++ea+lpre+e+r +Ere+ gr+++nv+aceg +r er t+++W+ r ++aGF+ +pl+ ++++++++ +r + + SMil_00013931-RA_Salv 520 HYSSAFDMMEATLPREDEDRLLYEREVYGRDVMNVIACEGPQRLERPDTYKQWQLRNQRAGFRLLPLNREIVEEVRAKVRSDYHSDFL 607 *****************************************************************************99777 PP GRAS 351 veeesgslvlgWkdrpLvsvSaWr 374 +ee+ g+l++gWk+r ++++S+W+ SMil_00013931-RA_Salv 608 LEEDGGWLLQGWKGRVMYALSCWK 631 ***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	63.099	234	611	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.0E-110	260	631	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 634 aa Download sequence Send to blast
MGTISRCDSR NEFQLSYAAE CGGYNPSQAA VHHSSEAPVP CDYFDGVFDY IKQMLMEEDD 60 LDHRPCMFHD CSALQAAEKY FSDALGDRAS SPPPPPLDFG GSASGNFPPC SDIVRDVSTI 120 SCDLDWLAES RAVVVDSNLP DQDSRNFHQV LGERRRNSSD DAAAAVKKTR DRGDSEEERR 180 SKQFAGYAEE SVQLDKYDKS LLCPKLNPRF YDDSPPSLDE DDDDDSEEES KKQYRKTKEV 240 KRGRPKGSKK NRKVSQVVDL RTLLTRCAEA VSTFNAAAAQ TLLKQIRNHS SPYGDPNERL 300 AHCFANALEA RMSGTGSALY TASAARSIPA AQLLKSYQTY VTACPFKRMS NIFANKSIGK 360 SSREATKLHI IDFGILYGFQ WPCIIHGLSL KPGGPPTLKI TGIDYPQPGF KPAERVEQTG 420 RRLVECCKRF NVPFEYKAIA KRWDDVALED LEIERDEMVV VNCLYRLRHT ADESDGVNSQ 480 RDAVLKLIKR INPQVLVHGV VNGSYNASYF PTRFKEALFH YSSAFDMMEA TLPREDEDRL 540 LYEREVYGRD VMNVIACEGP QRLERPDTYK QWQLRNQRAG FRLLPLNREI VEEVRAKVRS 600 DYHSDFLLEE DGGWLLQGWK GRVMYALSCW KTSN

Sequence ? help Back to Top

Protein Sequence Length: 634 aa Download sequence Send to blast

MGTISRCDSR NEFQLSYAAE CGGYNPSQAA VHHSSEAPVP CDYFDGVFDY IKQMLMEEDD  60
LDHRPCMFHD CSALQAAEKY FSDALGDRAS SPPPPPLDFG GSASGNFPPC SDIVRDVSTI  120
SCDLDWLAES RAVVVDSNLP DQDSRNFHQV LGERRRNSSD DAAAAVKKTR DRGDSEEERR  180
SKQFAGYAEE SVQLDKYDKS LLCPKLNPRF YDDSPPSLDE DDDDDSEEES KKQYRKTKEV  240
KRGRPKGSKK NRKVSQVVDL RTLLTRCAEA VSTFNAAAAQ TLLKQIRNHS SPYGDPNERL  300
AHCFANALEA RMSGTGSALY TASAARSIPA AQLLKSYQTY VTACPFKRMS NIFANKSIGK  360
SSREATKLHI IDFGILYGFQ WPCIIHGLSL KPGGPPTLKI TGIDYPQPGF KPAERVEQTG  420
RRLVECCKRF NVPFEYKAIA KRWDDVALED LEIERDEMVV VNCLYRLRHT ADESDGVNSQ  480
RDAVLKLIKR INPQVLVHGV VNGSYNASYF PTRFKEALFH YSSAFDMMEA TLPREDEDRL  540
LYEREVYGRD VMNVIACEGP QRLERPDTYK QWQLRNQRAG FRLLPLNREI VEEVRAKVRS  600
DYHSDFLLEE DGGWLLQGWK GRVMYALSCW KTSN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	3e-50	260	631	5	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011089501.1	0.0	scarecrow-like protein 14
Swissprot	Q9XE58	1e-162	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A4D9AJ80	0.0	A0A4D9AJ80_SALSN; Uncharacterized protein
STRING	Migut.D02077.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-151	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]