PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00013928-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 213aa    MW: 23027.9 Da    PI: 4.6999
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00013928-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.75.3e-174796155
                    AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           s y+GVr ++ +g+Wv+eIr+p++   ++r++lg++ tae+Aa a++ a+++l+g
  SMil_00013928-RA_Salv 47 SVYRGVR-CR-SGKWVSEIREPRK---TTRIWLGTYATAEMAAVAYDVAALALKG 96
                           78****9.55.6*********843...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-1947104IPR016177DNA-binding domain
PfamPF008473.3E-104796IPR001471AP2/ERF domain
CDDcd000188.19E-2847105No hitNo description
PROSITE profilePS5103219.87548104IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-2748105IPR001471AP2/ERF domain
SMARTSM003801.6E-2848110IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MECMSDENVN KSQQYSSLNR PNALSPKPSK KKKPSPPSAA ATEPPPSVYR GVRCRSGKWV  60
SEIREPRKTT RIWLGTYATA EMAAVAYDVA ALALKGPEAV INFPAFAPSY PPPASLSAAD  120
IRVAVANAAA TIASADAGGD DPPRPDQLKE SSSSADVYEF IDEEALFDMP KLLVDMAEGM  180
LLSPPRMKTA AEDRGDSPEN YSIDERLWSY PSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-13491041572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00558DAPTransfer from AT5G52020Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076239.25e-59LOW QUALITY PROTEIN: ethylene-responsive transcription factor ERF025
SwissprotQ9FJ905e-53ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A4D9BG101e-69A0A4D9BG10_SALSN; Uncharacterized protein
STRINGXP_010278525.14e-55(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55322110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.17e-31ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]