PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00013893-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | bHLH | ||||||||
Protein Properties | Length: 253aa MW: 28919.8 Da PI: 4.9847 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.1 | 7.4e-14 | 80 | 123 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 Er+RR+++N+++ Lr ++P+ +K++Ka+i + A+eYIksLq SMil_00013893-RA_Salv 80 VSERNRRRKLNERLYALRAVVPNI-----TKMDKASIIRDAIEYIKSLQ 123 57*********************7.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 17.041 | 73 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.12E-14 | 76 | 127 | No hit | No description |
SuperFamily | SSF47459 | 2.22E-17 | 77 | 137 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.5E-16 | 79 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.2E-17 | 79 | 137 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.9E-11 | 80 | 123 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
LIFTLFPRKA SPPHTLSTPI SYSHTLNMEN FDDDYTNFWE ANMFLQTEEL GSYFDEAISV 60 YYDSSSPDGV QLSPASKNIV SERNRRRKLN ERLYALRAVV PNITKMDKAS IIRDAIEYIK 120 SLQDEERRIL AEISDLELNG DFFEMDQEDV TNFRSKPKRT KVDKASSPIE VLEFRVSNMG 180 ENVVVVSLAC SKRRDTMIRL CEAFESLKLK IITCSINAFS GRLFKTLFLE GNDEDKDVLR 240 EKIEAAIAAA SSK |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP257455 | 0.0 | KP257455.1 Salvia miltiorrhiza clone 22 basic helix-loop-helix transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011077906.1 | 1e-108 | transcription factor bHLH35 | ||||
Swissprot | Q2HIV9 | 7e-74 | BH035_ARATH; Transcription factor bHLH35 | ||||
TrEMBL | A0A0H3YC25 | 1e-162 | A0A0H3YC25_SALMI; Basic helix-loop-helix transcription factor | ||||
STRING | XP_009760780.1 | 2e-91 | (Nicotiana sylvestris) | ||||
STRING | XP_009603227.1 | 2e-91 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2923 | 24 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57150.1 | 6e-63 | bHLH family protein |