PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00013843-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

FAR1

Protein Properties

Length: 570aa MW: 65030.8 Da PI: 7.066

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00013843-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	71.3	2.2e-22	103	192	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 Y++YAk++GFsvrk ++++ ++++e+ ++tfvCs+ g + +++ + + + ++ ++r++C+a l++ + + g w+vt++ ++HnHel SMil_00013843-RA_Salv 103 LYCDYAKHTGFSVRKGNQERFSKTKEVRMKTFVCSCRGLTPTTHIEGRLAVYKKHSSRCNCQALLRIARVEGGPWKVTTFIKDHNHEL 190 59************************************999999899999********************************** PP FAR1 90 ap 91 +p SMil_00013843-RA_Salv 191 FP 192 86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.9E-19	103	192	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 570 aa Download sequence Send to blast
MPNHHLLIIL AIGLRWGCSL DMLKTFLMFV LDEASSIRVS LMRLVASSSE KIGADVKSEF 60 LHETEDVANE VGHSTAVELE AVELEAKLAP GCLVDGFDEA FLLYCDYAKH TGFSVRKGNQ 120 ERFSKTKEVR MKTFVCSCRG LTPTTHIEGR LAVYKKHSSR CNCQALLRIA RVEGGPWKVT 180 TFIKDHNHEL FPKDQAYLLS SSRHISHTKK SMLEALHSAG IPISRACRFM ENEAGGPENT 240 GFIRRDVYHH MDNVRRKSKM ADGDSIAFMQ YFVDNLYTHK FGLQCSWLTV GASLMVGLQL 300 TSASHRLCQW HINQNAPSHF GSLNGNNDFK RAWHHCMNWC ENEEEFESLW KKMIEDYGLA 360 EHRWFGSMYK LRKRWALVFI NSRFSAGLHA TSRSEVTNKV LKDLCASSGS LFDFVQKYEQ 420 IQKDWLVKER ADDALCIGTP GQFVEHNPLV MAAAKYFTRA VFVSYEFEAN HSLNVSIIGN 480 LTADDVQQLR FVVKTTTNPL RTRCVIFHRT SHEASYSNTV YASQETWDLI SRRYPDLMCY 540 NPEGEENWAI LKELYDETDT TTSDSSANDE

Sequence ? help Back to Top

Protein Sequence Length: 570 aa Download sequence Send to blast

MPNHHLLIIL AIGLRWGCSL DMLKTFLMFV LDEASSIRVS LMRLVASSSE KIGADVKSEF  60
LHETEDVANE VGHSTAVELE AVELEAKLAP GCLVDGFDEA FLLYCDYAKH TGFSVRKGNQ  120
ERFSKTKEVR MKTFVCSCRG LTPTTHIEGR LAVYKKHSSR CNCQALLRIA RVEGGPWKVT  180
TFIKDHNHEL FPKDQAYLLS SSRHISHTKK SMLEALHSAG IPISRACRFM ENEAGGPENT  240
GFIRRDVYHH MDNVRRKSKM ADGDSIAFMQ YFVDNLYTHK FGLQCSWLTV GASLMVGLQL  300
TSASHRLCQW HINQNAPSHF GSLNGNNDFK RAWHHCMNWC ENEEEFESLW KKMIEDYGLA  360
EHRWFGSMYK LRKRWALVFI NSRFSAGLHA TSRSEVTNKV LKDLCASSGS LFDFVQKYEQ  420
IQKDWLVKER ADDALCIGTP GQFVEHNPLV MAAAKYFTRA VFVSYEFEAN HSLNVSIIGN  480
LTADDVQQLR FVVKTTTNPL RTRCVIFHRT SHEASYSNTV YASQETWDLI SRRYPDLMCY  540
NPEGEENWAI LKELYDETDT TTSDSSANDE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-19	FAR1-related sequence 5