PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00013822-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

C3H

Protein Properties

Length: 488aa MW: 52443 Da PI: 7.3594

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00013822-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.2	4.5e-06	438	460	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C +f + C+ G++C+F H+ SMil_00013822-RA_Salv 438 KPCIYFNSSRGCRNGANCTFQHD 460 69********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	12.38	434	462	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.5E-4	438	460	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.8E-4	438	461	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.22E-5	439	470	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence Send to blast
MGGSQKSKSV SWASEVNLCQ VRLFLSEESP SQVGMGTQEH LQAKTWPLQA GGMGSEDNLP 60 PGFELSQPAN PWAAKLSHIS LVKWKCPPRI EVDSSWRVVA GEESREIETQ NQREMRVLEA 120 IYPRPSAIPL NPSALVGAED STNNDQCTPV VPITPIEDED ASVDTSYASM GSNITPMIPQ 180 QQHSPHGAFL SQVNAALKPT VGFSVTGMEP DIIAAAQAAL SSVMSNSDQG NLIDRELLMK 240 ILSDRKMIEQ LIANHAASAS GQNVASSSAQ SMPSSSTFHG MPNIGTKNVA SSSSPGMPST 300 SAQYIPNLVS TPKSSFDSVN MAVHRRDPLS GRVTRPEMVV PSSISAASGP FHPPSRTGSI 360 PHLRPSVSDV ISAPSPSASA PVTKDINYYK SLIQQHGGER REAMPQFAHQ SNQAPGIGQE 420 PLNNTMMKPR DTKPRIMKPC IYFNSSRGCR NGANCTFQHD VTSQQKVNSI PDVQGTKRMK 480 LDREITGA

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence Send to blast

MGGSQKSKSV SWASEVNLCQ VRLFLSEESP SQVGMGTQEH LQAKTWPLQA GGMGSEDNLP  60
PGFELSQPAN PWAAKLSHIS LVKWKCPPRI EVDSSWRVVA GEESREIETQ NQREMRVLEA  120
IYPRPSAIPL NPSALVGAED STNNDQCTPV VPITPIEDED ASVDTSYASM GSNITPMIPQ  180
QQHSPHGAFL SQVNAALKPT VGFSVTGMEP DIIAAAQAAL SSVMSNSDQG NLIDRELLMK  240
ILSDRKMIEQ LIANHAASAS GQNVASSSAQ SMPSSSTFHG MPNIGTKNVA SSSSPGMPST  300
SAQYIPNLVS TPKSSFDSVN MAVHRRDPLS GRVTRPEMVV PSSISAASGP FHPPSRTGSI  360
PHLRPSVSDV ISAPSPSASA PVTKDINYYK SLIQQHGGER REAMPQFAHQ SNQAPGIGQE  420
PLNNTMMKPR DTKPRIMKPC IYFNSSRGCR NGANCTFQHD VTSQQKVNSI PDVQGTKRMK  480
LDREITGA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011083502.1	0.0	zinc finger CCCH domain-containing protein 6
TrEMBL	A0A4D9ABS7	0.0	A0A4D9ABS7_SALSN; Uncharacterized protein
STRING	XP_009595509.1	1e-152	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5147	7	9