PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00013768-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | NF-YB | ||||||||
Protein Properties | Length: 188aa MW: 21041.6 Da PI: 4.3364 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 58.6 | 1.5e-18 | 11 | 80 | 3 | 72 |
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwala 72 ++d+ lP a +++i+k++lP + ++++da++++ ec +efi +++se+++ c++e+++ti+++ +l al SMil_00013768-RA_Salv 11 KEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLISSESNEICNKEDKRTIAPEHVLKALQ 80 6899**************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.3E-27 | 10 | 81 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 5.32E-25 | 12 | 82 | IPR009072 | Histone-fold |
Pfam | PF00808 | 4.1E-22 | 14 | 79 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.5E-5 | 104 | 171 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MEPMDIVGRT KEDASLPKAT MTKIIKEMLP PDVRVARDAQ DLLIECCVEF INLISSESNE 60 ICNKEDKRTI APEHVLKALQ NPKIASGEET EACVNSVFRF ERTSDIVNFW GALGFSEYME 120 DVYAAYEQHR VETIDTMRSG KWSNGAEMTE EEALAEQQRM FAEARARMNG GASAPKQSDP 180 ETEPSANS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_B | 2e-27 | 12 | 165 | 12 | 133 | Transcription Regulator NC2 beta chain |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011096999.1 | 1e-97 | protein Dr1 homolog | ||||
Refseq | XP_011097000.1 | 1e-97 | protein Dr1 homolog | ||||
Swissprot | P49592 | 2e-84 | NC2B_ARATH; Protein Dr1 homolog | ||||
TrEMBL | A0A4D8ZI50 | 4e-96 | A0A4D8ZI50_SALSN; Uncharacterized protein | ||||
STRING | Migut.D01587.1.p | 1e-93 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3820 | 22 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23090.4 | 9e-89 | nuclear factor Y, subunit B13 |
Publications ? help Back to Top | |||
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