PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00013761-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | MYB_related | ||||||||
Protein Properties | Length: 255aa MW: 28105.9 Da PI: 10.1641 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.1 | 1.8e-07 | 99 | 120 | 23 | 45 |
-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwq 45 +W+ Ia++++ gRt++++k +w+ SMil_00013761-RA_Salv 99 RWAQIAKHLP-GRTDNEVKIFWN 120 5*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 2.6E-5 | 59 | 125 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-5 | 66 | 90 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.54E-9 | 66 | 124 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 8.037 | 66 | 123 | IPR017877 | Myb-like domain |
Pfam | PF00249 | 3.0E-9 | 66 | 121 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.27E-9 | 67 | 120 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.5E-10 | 98 | 123 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MRRGPTPSSS PSSPETRRKP NLSLTLCSLS SISSLTLNSL SRPTPSLTQW QQPPPSTAAI 60 APRHHKEDEK LINYISTYGH GCWSTVPRLA GPSLSLSHRW AQIAKHLPGR TDNEVKIFWN 120 SSIKKKIMAH HNMSSSALIS SSNLQHPNLI IPNNPQIDQI IIPNSQMEQL GCQALKQDNG 180 VVLGYDGGYD QDSALLDALM PELAEMAKGL EFGVSANAAE PPQRAALPCS PPELRRPRRR 240 RHRHRRTPSF GEGVD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 234 | 239 | RRPRRR |
2 | 235 | 242 | RPRRRRHR |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF059521 | 1e-114 | KF059521.1 Salvia miltiorrhiza MYB-related transcription factor (MYB57) gene, complete cds. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15896 | 3 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13890.2 | 1e-23 | myb domain protein 26 |