PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00013584-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | WRKY | ||||||||
Protein Properties | Length: 203aa MW: 23696.4 Da PI: 7.0306 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.7 | 6.7e-30 | 129 | 187 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +dDg++WrKYG+K+vk+s++pr+Y++C+ +C+vkk+ver+a+d ++v++tYeg Hnhe SMil_00013584-RA_Salv 129 MDDGFKWRKYGKKMVKSSPNPRNYFKCSNGECSVKKRVERDANDSRFVITTYEGVHNHE 187 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.2E-31 | 117 | 189 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.62E-26 | 122 | 189 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.471 | 124 | 189 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.7E-32 | 129 | 188 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.6E-23 | 130 | 187 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MERNKEELIW GTSQKGKKIN FDSAIDAGIN PQFQKSHNPN PNPNPNPNFD EVVHDILHLD 60 DQIYFKDVSD YLMSEENPEE TDLSQNKSIY DESSSSIGNK EYRTIVKNYN KEKQDFRVAF 120 RTKSKLEIMD DGFKWRKYGK KMVKSSPNPR NYFKCSNGEC SVKKRVERDA NDSRFVITTY 180 EGVHNHESPT CVLYCNPKSF LFD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-24 | 119 | 190 | 7 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 2e-24 | 119 | 190 | 7 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020554654.1 | 1e-49 | probable WRKY transcription factor 51 | ||||
TrEMBL | A0A2G9IAT5 | 3e-56 | A0A2G9IAT5_9LAMI; Uncharacterized protein | ||||
STRING | XP_010243312.1 | 3e-44 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2124 | 24 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64810.1 | 8e-37 | WRKY DNA-binding protein 51 |