PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00013498-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

CAMTA

Protein Properties

Length: 948aa MW: 107297 Da PI: 7.1819

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00013498-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	165.2	1.1e-51	62	178	3	118
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahse 89 +e ++rwl+++ei+aiL n++ + ++ ++ + pksg+++L++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+e SMil_00013498-RA_Salv 62 EEaTSRWLRPNEIHAILSNHKYFPVHVKPMNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGE 149 45489********************************************************************************* PP CG-1 90 enptfqrrcywlLeeelekivlvhylevk 118 +n+tf rrcywlL+++le+ivlvhy+e++ SMil_00013498-RA_Salv 150 DNSTFVRRCYWLLDKSLEHIVLVHYRETQ 178 ************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	77.226	57	183	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	9.1E-74	60	178	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	4.7E-46	63	176	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	4.06E-10	400	487	IPR014756	Immunoglobulin E-set
Pfam	PF12796	2.4E-8	585	665	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	8.25E-18	585	695	No hit	No description
SuperFamily	SSF48403	1.71E-19	589	700	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	17.502	591	707	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	3.9E-19	592	698	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	11.007	636	668	IPR002110	Ankyrin repeat
SMART	SM00248	3.3E-5	636	665	IPR002110	Ankyrin repeat
SMART	SM00248	2200	675	705	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	6.11E-6	749	850	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PROSITE profile	PS50096	7.144	784	810	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	25	799	821	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	6.998	800	826	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0069	822	844	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.542	823	847	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.0047	824	844	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	4.6	902	924	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.95	904	932	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 948 aa Download sequence Send to blast
LLILDSSVNL NHPIIWEFYN FWGRQVICQL QMEGNSVPSR LVGLEIHGFR TMEDLDFQNI 60 LEEATSRWLR PNEIHAILSN HKYFPVHVKP MNLPKSGTIV LFDRKMLRNF RKDGHNWKKK 120 KDGKTVKEAH EHLKVGNEER IHVYYAHGED NSTFVRRCYW LLDKSLEHIV LVHYRETQEN 180 SPATPVKSPF PTWTLPEGSE SAIDSMYYDG SMPVLERNDS VVIKTHEQRL HEINTLDWDE 240 LLVPIDPNKH NSPQEGKTAG FELPNQYHTN NYKISNDAQS TNKVSPESSD NSFSGQAAYS 300 VNYNIPNNSS YQTVGLETTF SSDTRTSGLV TLGGAGNGMH SVGADGSQSQ DSFGTTHVVA 360 GSPDSVDNQS LESSLLNSHQ SFSYNMKDNH HHPPLGQIFN VTDISPAWAL STEETKILVV 420 GFFSDGHQHY ADSKLYLACG DSVIPVEVVQ AGVFRCLISS QAPGLVNLFM TFDGHNPVSQ 480 VLTFEFRAPI QHNGLVSTEN TDNWEEFQLQ MRLARLLFSS SKDLSVYTAK PSQSALKEAK 540 VFAKKTSVIS LGWGYLCKMI EEAKMSFPQA KDRLFELTLE NRLQEWLLEK VATGCKITER 600 DEQGQGVIHL CAVLGYTWAV RLFSQSSLSL DYRDKCGWTA LHWAAYYGRE KMVATLLSVG 660 AKPNLVTDPT SQNPGGCTAA DLASLSGHEG LAAFLAEKAL VAQFKDMTLA GNVSGSLQTT 720 TNDMVDTGSF TEEEVYLKDT LAAYRTAADA AARIQAAFRE HALKVQTQAV EASSPETEAR 780 NIVAAMRIQH AFRNYETRKK IAAAARIQYR FRTWKIRKDF LNMRRQAIRI QANFRGFQVR 840 RQYRKICWSV GVLEKAILRW RLKRKGFRGL QVQPDETLPD QNQESDAEED FFKASRKQAE 900 ERVERSVVKV QAMFRSRRAQ EEYRRMKVEC SRATLEYEEL LHPDTQMG

Sequence ? help Back to Top

Protein Sequence Length: 948 aa Download sequence Send to blast

LLILDSSVNL NHPIIWEFYN FWGRQVICQL QMEGNSVPSR LVGLEIHGFR TMEDLDFQNI  60
LEEATSRWLR PNEIHAILSN HKYFPVHVKP MNLPKSGTIV LFDRKMLRNF RKDGHNWKKK  120
KDGKTVKEAH EHLKVGNEER IHVYYAHGED NSTFVRRCYW LLDKSLEHIV LVHYRETQEN  180
SPATPVKSPF PTWTLPEGSE SAIDSMYYDG SMPVLERNDS VVIKTHEQRL HEINTLDWDE  240
LLVPIDPNKH NSPQEGKTAG FELPNQYHTN NYKISNDAQS TNKVSPESSD NSFSGQAAYS  300
VNYNIPNNSS YQTVGLETTF SSDTRTSGLV TLGGAGNGMH SVGADGSQSQ DSFGTTHVVA  360
GSPDSVDNQS LESSLLNSHQ SFSYNMKDNH HHPPLGQIFN VTDISPAWAL STEETKILVV  420
GFFSDGHQHY ADSKLYLACG DSVIPVEVVQ AGVFRCLISS QAPGLVNLFM TFDGHNPVSQ  480
VLTFEFRAPI QHNGLVSTEN TDNWEEFQLQ MRLARLLFSS SKDLSVYTAK PSQSALKEAK  540
VFAKKTSVIS LGWGYLCKMI EEAKMSFPQA KDRLFELTLE NRLQEWLLEK VATGCKITER  600
DEQGQGVIHL CAVLGYTWAV RLFSQSSLSL DYRDKCGWTA LHWAAYYGRE KMVATLLSVG  660
AKPNLVTDPT SQNPGGCTAA DLASLSGHEG LAAFLAEKAL VAQFKDMTLA GNVSGSLQTT  720
TNDMVDTGSF TEEEVYLKDT LAAYRTAADA AARIQAAFRE HALKVQTQAV EASSPETEAR  780
NIVAAMRIQH AFRNYETRKK IAAAARIQYR FRTWKIRKDF LNMRRQAIRI QANFRGFQVR  840
RQYRKICWSV GVLEKAILRW RLKRKGFRGL QVQPDETLPD QNQESDAEED FFKASRKQAE  900
ERVERSVVKV QAMFRSRRAQ EEYRRMKVEC SRATLEYEEL LHPDTQMG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00435	DAP	Transfer from AT4G16150	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011100790.1	0.0	calmodulin-binding transcription activator 5 isoform X2
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A4D9BHR3	0.0	A0A4D9BHR3_SALSN; Uncharacterized protein
STRING	Migut.G00093.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4565	22	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]