PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00013424-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | TCP | ||||||||
Protein Properties | Length: 236aa MW: 25957.9 Da PI: 7.0794 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 117.5 | 1.7e-36 | 19 | 118 | 1 | 103 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas.... 83 a+g+kdrhsk++T++g+RdRRvRl a++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el+++++ +++++ e+e+++ + + SMil_00013424-RA_Salv 19 ATGRKDRHSKVCTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELAQLPAWHPTSAlEEERRRHQFGidlv 106 589**************************************************************77777444322222222222222 PP TCP 84 ...nsssgkaaksaakskksqks 103 + +s++++++ SMil_00013424-RA_Salv 107 ianT-----------NSRNADAQ 118 2210...........11122222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.4E-31 | 20 | 95 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.273 | 22 | 80 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MRNIGGEIVE VEGGHIVRAT GRKDRHSKVC TAKGPRDRRV RLAAHTAIQF YDVQDRLGYD 60 RPSKAVDWLI KKAKAAIDEL AQLPAWHPTS ALEEERRRHQ FGIDLVIANT NSRNADAQNS 120 SFLPPSLDSD AIADTIKSFF PASAEASSGA MQFQSFPAPD LVSRNGGGSS SQDLRLSLQS 180 FQDPILLHHH NEQPQPQAQP QTQVLLCGTP LGLDGWPEHH QFQRLAAWNG GGDGYL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-20 | 27 | 80 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 3e-20 | 27 | 80 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18816164, ECO:0000269|PubMed:25378179}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:18816164}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM468863 | 1e-81 | AM468863.2 Vitis vinifera contig VV78X023076.3, whole genome shotgun sequence. | |||
GenBank | FQ381831 | 1e-81 | FQ381831.1 Vitis vinifera clone SS0ABG82YF20. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011082737.1 | 1e-112 | transcription factor TCP4-like | ||||
Refseq | XP_011082738.1 | 1e-112 | transcription factor TCP4-like | ||||
Swissprot | Q8LPR5 | 2e-67 | TCP4_ARATH; Transcription factor TCP4 | ||||
TrEMBL | A0A2G9HTM9 | 1e-103 | A0A2G9HTM9_9LAMI; Uncharacterized protein | ||||
STRING | cassava4.1_004517m | 2e-86 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3207 | 23 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 7e-53 | TCP family protein |