PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00013399-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family M-type_MADS
Protein Properties Length: 218aa    MW: 24366.9 Da    PI: 6.6372
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00013399-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF59.25.2e-191967149
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                           k+ie k+  qv fskRr g++ KA+EL vLC+aeva+++ s+ +kl+ +
  SMil_00013399-RA_Salv 19 KKIEKKTSLQVAFSKRRGGLFRKASELAVLCGAEVAILVQSPADKLFAF 67
                           68********************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554555.62E-251180IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.3151171IPR002100Transcription factor, MADS-box
SMARTSM004326.7E-301170IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-181333IPR002100Transcription factor, MADS-box
PfamPF003195.8E-212067IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-183348IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-184869IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MEKPNNGKKT MGRRKIEIKK IEKKTSLQVA FSKRRGGLFR KASELAVLCG AEVAILVQSP  60
ADKLFAFGHP SVGALIDRVS PSPAAAAPPQ IALRRADDGR IKCEEAVKML EMERRRAAEK  120
EITGGFWWER PHEGMELHEL EEFLKALEDF GDKVAERVEE FQKLMMKNST PPLMHAPIAA  180
ANNGGDEDDL IYFHPNMHAP ITAPSNGDDD IYFHLSDF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096574.15e-50agamous-like MADS-box protein AGL23
STRINGMigut.H00739.1.p3e-42(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13821415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-27AGAMOUS-like 62