PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00013373-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | LBD | ||||||||
Protein Properties | Length: 145aa MW: 16743.1 Da PI: 6.9388 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 103.3 | 2.1e-32 | 5 | 104 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 aCa+C++l+++C +dC+l pyfp+e++++f++vhk+FG +n++++++ ++e+er++a+++l+ eA++r++d v+Ga+gv ++l+ q SMil_00013373-RA_Salv 5 ACAVCRHLGKQCDEDCILGPYFPQERTQEFKYVHKVFGIHNLTQIVSCVEEHERPTAIETLIIEAKMRVHDKVHGAYGVESNLRAQWT 92 7*************************************************************************************** PP DUF260 89 qlkaelallkee 100 ++ +el+ll+++ SMil_00013373-RA_Salv 93 NAVEELNLLNHH 104 *******99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.998 | 4 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.0E-30 | 5 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 145 aa Download sequence Send to blast |
MDEAACAVCR HLGKQCDEDC ILGPYFPQER TQEFKYVHKV FGIHNLTQIV SCVEEHERPT 60 AIETLIIEAK MRVHDKVHGA YGVESNLRAQ WTNAVEELNL LNHHLRSLRA QLNRENKFAS 120 SSITISLRPS LPNLFNYLRP YVELQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 8e-20 | 4 | 105 | 10 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 8e-20 | 4 | 105 | 10 | 111 | LOB family transfactor Ramosa2.1 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2866 | 17 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06280.1 | 2e-22 | LOB domain-containing protein 2 |