PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00013242-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

TCP

Protein Properties

Length: 283aa MW: 31891.3 Da PI: 8.512

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00013242-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	109.4	5.3e-34	66	183	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg. 88 g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak++i+el+ +++++++ ++ +++ +++ ++ SMil_00013242-RA_Salv 66 FGGKDRHSKVCTVRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKAEIDELPPLQFPHPTMLDNLNNQLDLKSKDHQd 153 689*************************************************************777773332222222222222220 PP TCP 89 .............................k 89 + SMil_00013242-RA_Salv 154 hhhsylnqnqnqnpsssttsnipfnssfvR 183 000111111111122333333444444441 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.2E-30	68	169	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	32.112	68	126	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MRSDSCGSSK PYSAIGVLDS IYVEDLKEMQ QQQRQQHNNN ISSLKAATTS WSRLKDPRIV 60 RVSRAFGGKD RHSKVCTVRG LRDRRVRLSV PTAIQLYDLQ DRLGLNQPSK VVDWLLNAAK 120 AEIDELPPLQ FPHPTMLDNL NNQLDLKSKD HQDHHHSYLN QNQNQNPSSS TTSNIPFNSS 180 FVRWDPSTLT LSHPPRSPNC SSSPHQQPAA EDWHNFSLVQ PHHHHHHHQV LVYQPAAAMA 240 AQPYFQSQIS ASNADFSPSV EASTHFNIIT ANLLPSQNND GSR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	2e-18	73	127	1	55	Putative transcription factor PCF6
5zkt_B	2e-18	73	127	1	55	Putative transcription factor PCF6
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006338357.1	2e-64	PREDICTED: transcription factor TCP17
TrEMBL	A0A4D9BUB5	4e-70	A0A4D9BUB5_SALSN; Uncharacterized protein
STRING	PGSC0003DMT400003453	7e-64	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA821	24	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60970.1	8e-46	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5