PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00013240-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

Dof

Protein Properties

Length: 271aa MW: 29878.1 Da PI: 6.4928

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00013240-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	82.2	5.4e-26	11	71	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++ l+cprC s +t+f y+nn sl+qPr+ C++C+r Wt GG lr +PvGg +r+ k+s+ SMil_00013240-RA_Salv 11 PQTPLECPRCGSLDTRFRYFNNNSLTQPRFHCRTCKRQWTVGGRLRLIPVGGNTRNGKSSK 71 67889**************************************************999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-14	1	62	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.8E-26	14	69	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	22.163	15	69	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MEQSRAEAQQ PQTPLECPRC GSLDTRFRYF NNNSLTQPRF HCRTCKRQWT VGGRLRLIPV 60 GGNTRNGKSS KASSSKGGNS RSQPTKPLPS SGEGHQQHLT LMMAMVSQNF DTTLFQPVTN 120 MPAAISSPNY FSNQISCLDA TRTLMQQVDN QHPSAINLCS SAGTNMSIPQ ERNVQTTAPD 180 KALSQQNSIT FEPYQTHTEA TNAPPSHLCI NGVVQPAWSM NLLPQDIAYD ASFTITNACI 240 PNNLSGDTTD TEDTTYVNVD EWLNFQECDP S

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA16144	5	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	1e-18	TARGET OF MONOPTEROS 6